View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_high_11 (Length: 465)
Name: NF0918_high_11
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_high_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 29 - 465
Target Start/End: Complemental strand, 26375810 - 26375374
Alignment:
| Q |
29 |
attttaaactatcataggtcatattcattcatggcatacaagccagaaagattttaaactatcataggtcatattcattcatggcatacaagccaaaaag |
128 |
Q |
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| T |
26375810 |
attttaaacaaacctaggtcatattcattcatggcatacaagccagaaagattttaaactatcctaggtcatattcattcatggcatacaagccaaaaag |
26375711 |
T |
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| Q |
129 |
attgtaaagtggttgcatgcaattgtcatttggtgatatttacaactgagtttattcctctatataacttggtaaatttacaatcaataccacaaggatg |
228 |
Q |
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| T |
26375710 |
attgtaaagtggttgcatgcaattgtcatttggtgatatttacaactgagtttattcctctatataacttggtaaatttacaatcaataccacaaggatg |
26375611 |
T |
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| Q |
229 |
tagacaaaccgcttaaaattaaaagcatcttattaagaatttaattgaataactaattactaaataaaagagtgattcaatcgtttcacgtggaaaacca |
328 |
Q |
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| T |
26375610 |
tagacaaaccgcttaaaattaaaagtatcttattaagaatttaattgaataactaattactaaataaaagtgtgattcaatcgtttcacgtggaaaacca |
26375511 |
T |
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| Q |
329 |
atttctcataaaggttaatataccagacattctaagtagcaaacaaaaataaactatttactagtaaatcaagctgttgctcaaaacctgaacaaagatt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26375510 |
atttctcataaaggttaatataccagacattctaagtagcaaacaaaaataaactatttactagtaaatcaagctgttgctcaaaacctgaacaaagaat |
26375411 |
T |
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| Q |
429 |
ccttaatagaggtaaagaaataaaaactaaccatttt |
465 |
Q |
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| T |
26375410 |
ccttaatagaggtaaagaaataaaaactaaccatttt |
26375374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26375788 - 26375703
Alignment:
| Q |
1 |
attcattcatggcatacaagccagaaagattttaaactatcataggtcatattcattcatggcatacaagccagaaagattttaaa |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
26375788 |
attcattcatggcatacaagccagaaagattttaaactatcctaggtcatattcattcatggcatacaagccaaaaagattgtaaa |
26375703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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