View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_high_13 (Length: 444)
Name: NF0918_high_13
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Original strand, 41043270 - 41043673
Alignment:
| Q |
30 |
tcaagttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaannnnnnnccctttgg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41043270 |
tcaagttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaatttttttccctttgg |
41043369 |
T |
|
| Q |
130 |
catttgctttttaatgttcttgtcaccaatctgaaaatcaaatccttcatgttcatcatcctcaatggaattcataattttagtaagattgctaggctcc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043370 |
catttgctttttaatgttcttgtcaccaatctgaaaatcaaatccttcatgttcatcatcctcaatggaattcataattttagtaagattgctaggctcc |
41043469 |
T |
|
| Q |
230 |
ttatatttgcttggtggatctggaggcgctgatggaaataggggtccttgtttcacagatttcttgcgcgaaaaggttcgagacagctgcttttgcagtc |
329 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043470 |
ttatatttgcttggtggatctggaggcgttgatggaaataggggtccttgtttcacagatttcttgcgcgaaaaggttcgagacagctgcttttgcagtc |
41043569 |
T |
|
| Q |
330 |
cctctgaaccttttttagccaaatctcttgcttgtttccatttttcgcgagcctgtaccgtttctcttacgtgttttgctgcagcttctcttgattttgc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043570 |
cctctgaaccttttttagccaaatctcttgcttgtttccatttttcgcgagcctgtaccgtttctcttacgtgttttgctgcagcttctcttgattttgc |
41043669 |
T |
|
| Q |
430 |
cttt |
433 |
Q |
| |
|
|||| |
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|
| T |
41043670 |
cttt |
41043673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 28087153 - 28087022
Alignment:
| Q |
30 |
tcaagttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaannnnnnnccctttgg |
129 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || || || | ||| |||||||| |
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| T |
28087153 |
tcaagttattgtttttctcttgttgagctttctccttctcaatctgaccataagcatatcttaaaatttgactttgcgtatgtaaattttttccctttgg |
28087054 |
T |
|
| Q |
130 |
catttgctttttaatgttcttgtcaccaatct |
161 |
Q |
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||||||||||||||| || ||||| ||||||| |
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| T |
28087053 |
catttgctttttaatatttttgtccccaatct |
28087022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 28086769 - 28086715
Alignment:
| Q |
372 |
tttcgcgagcctgtaccgtttctcttacgtgttttgctgcagcttctcttgattt |
426 |
Q |
| |
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|||| ||||| ||||| |||||||| || ||| |||||||||||||||||||||| |
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|
| T |
28086769 |
tttctcgagcttgtacagtttctctcacctgtcttgctgcagcttctcttgattt |
28086715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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