View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_high_15 (Length: 405)
Name: NF0918_high_15
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 29 - 405
Target Start/End: Complemental strand, 3568960 - 3568584
Alignment:
| Q |
29 |
actatatcatctgccaaaaaatcaggttgaaccgcaagcatgctactatcttcagacatgacggtacctgaattaccaacaagttccatgtcatgttgga |
128 |
Q |
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| T |
3568960 |
actatatcatctgccaaaaaaccaggttgaaccgcaagcatgctactatcttcagacatgacggtacctgaattaccaacaagttccatgtcatgttgga |
3568861 |
T |
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| Q |
129 |
tgttaggatgtatatccttgttagaaccaatctcatgaatgttactgttgcttaaagatttgccatagagatatctgaatgggcagcatcctcacgtgca |
228 |
Q |
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| T |
3568860 |
tgttaggatatatatccttgttagaaccaatctcatgaatgttactgttgcttaaagatttgccatagagatatctgaatgggcagcatcctcacgtgca |
3568761 |
T |
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| Q |
229 |
accagctgttgctcctcactgtgcacgccctcataatctaaatgtgctatgttggccgagttagcaagatcattctgctgatgcgccaatgtgggtgagg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568760 |
accagctgttgctcctcactgtgcacgccctcataatccaaatgtgctatgttggccgagttagcaagatcattctgctgatgcgccaatgtgggtgagg |
3568661 |
T |
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| Q |
329 |
agccagaagggcgtattccttcaatcgtgtggtctatgcacacttcctcttgggagaaatgttggaccagcaaagga |
405 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568660 |
agccagaagggcgtattccttcaatcatgtggtctatgcacacttcctcttgggagaaatgttggaccagcaaagga |
3568584 |
T |
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