View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_high_17 (Length: 395)
Name: NF0918_high_17
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 8793937 - 8793630
Alignment:
| Q |
30 |
acttcacaattcaaatgtccagtgaatgaacgaaaggtcaaacacctgaacaaccaaccattatatcgctcttgcaaagtatactctctatgttgctatg |
129 |
Q |
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| T |
8793937 |
acttcacaattcaaatgtccagtgaatgaacgaaaggtcaaacacctgaacaaacaaccattatatggctcttgcaaagtatactctctatgttgctatg |
8793838 |
T |
|
| Q |
130 |
tacttaatagattgtttttccnnnnnnntatgttttgattaataagcaaattttaaacatatactcctgtctttaaataattataaagtaattgatagag |
229 |
Q |
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| T |
8793837 |
tacttaatagattgtttttccaaaaaaatatgttttgattaataagcaaattttaaacatatactcttgtcttttaataattataaagtaattgatagag |
8793738 |
T |
|
| Q |
230 |
aaagagtataactgat-nnnnnnntattgtatataaaaaatcatgttgagagatatcgacctcttaaatgcatctcaatttatttagtactatgatgtta |
328 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8793737 |
aaagagtataactgataaaaaaaatattatatataaaaaatcatgttgagagatatcgacctcttaaatgtatctcaatttatttagtactatgatgtta |
8793638 |
T |
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| Q |
329 |
agaatgga |
336 |
Q |
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||| |||| |
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| T |
8793637 |
agagtgga |
8793630 |
T |
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