View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_high_23 (Length: 333)
Name: NF0918_high_23
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_high_23 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 97 - 333
Target Start/End: Complemental strand, 29150858 - 29150622
Alignment:
| Q |
97 |
aatagacacataccggtgtaataatttctagagtatttagatggttgcataaggttagtatgtacgaaagggtcaaagcttctcttatattatcaaaatc |
196 |
Q |
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| T |
29150858 |
aatagatacataccggtgtaataatttctagagtatttagatggttacataaggttagtatgtacgaaagggtcaaagcttctcttatattatccaaatc |
29150759 |
T |
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| Q |
197 |
caaatcaattgacaaggtcaataaattttgaaaaatgttggttgattgagatgcctacattgaagagttagttagcacaactacatattatatctaaaga |
296 |
Q |
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| T |
29150758 |
caaatcaattgacaaggtcaacgaattttgaaaaatgttggttgattgagatgcctacattgaagagttagttagcacaactacatattatatctaaaga |
29150659 |
T |
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| Q |
297 |
caccataatattattaaaaaattaaacaataacttat |
333 |
Q |
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| T |
29150658 |
caccataatattattaaaaagttaaacaataacttat |
29150622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 33527620 - 33527758
Alignment:
| Q |
103 |
cacataccggtgtaataatttctagagtatttagatggttgcataaggttagtatgtacgaaagggtcaaagcttctcttatattatcaaaatccaaatc |
202 |
Q |
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| T |
33527620 |
cacataccggtatagaaatttcaagggtattgagacagatgcatgactttagtatgtatgaaagtgccaaagcttctcttatattattcaaatccaattc |
33527719 |
T |
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| Q |
203 |
aattgacaaggtcaataaattttgaaaaatgttggttga |
241 |
Q |
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| T |
33527720 |
aattgataaggtcgatagattttgaaaaatgttgtttga |
33527758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 33313652 - 33313520
Alignment:
| Q |
103 |
cacataccggtgtaataatttctagagtatttagatggttgcataaggttagtatgtacgaaagggtcaaagcttctcttatattatca---aaatccaa |
199 |
Q |
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||||||||||| || |||||| |||||||| |||| ||||||| | |||||||||| ||||| | | |||||||| ||||||||| | ||||||| |
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| T |
33313652 |
cacataccggtatagcaatttcgagagtattgagatagttgcatgaccttagtatgtatgaaagtgcccaagcttcttttatattattattcaaatccag |
33313553 |
T |
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| Q |
200 |
atcaattgacaaggtcaataaattttgaaaaat |
232 |
Q |
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| T |
33313552 |
ttcaattgataaggtcaacagatttcgaaaaat |
33313520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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