View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_high_29 (Length: 263)
Name: NF0918_high_29
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_high_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 9417465 - 9417702
Alignment:
| Q |
30 |
tatataaataagagcaatccaaagttatatttacttttctgttaatttacgtatcacaactcagtctcaattctcatctatgtcaatctccatctcaatg |
129 |
Q |
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| T |
9417465 |
tatataaataagagcaatccaaagttatatttacttttctgtcaatttacgtatcacaactcaatctcaattctcatctatgccaatctccatctcaatg |
9417564 |
T |
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| Q |
130 |
gagtactttac----attccaaggtttaatggagccaaataaagtttgcaatgatgattgattaacttgtgagatttgcattgaatctaagaagaccgag |
225 |
Q |
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| T |
9417565 |
gagtactttacttacattccaaggtttaatggagctaaataaagtttgcaatgatgattgatttacttgtgagatttgcattgaatctaagaagaccgag |
9417664 |
T |
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| Q |
226 |
ttaccaattacatagtcaatgtttgaggattccaattt |
263 |
Q |
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| T |
9417665 |
ttaccaattacatagtcaatgtttgaggattcaaattt |
9417702 |
T |
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