View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_12 (Length: 516)
Name: NF0918_low_12
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 48856688 - 48857036
Alignment:
| Q |
13 |
gctgttgcagtgaatggaatgtgaagctgtggatgattatgggatcagctatgctgataaggtttaataatttgttcttttttataagtttctctggtat |
112 |
Q |
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| T |
48856688 |
gctgctgcagtgaatggaatgtgaagctgtggatgattatgggatcagctatgctgataaggtttaataatttgttcttttttataagtttctctggtat |
48856787 |
T |
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| Q |
113 |
ttgactgtagcacagagaatacacattgacttcctgtcaatttgatattccaacgacccctgacccctcttacattttgatttctgagatcactattggc |
212 |
Q |
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| T |
48856788 |
ttgactgtagcacagagaataaacattgacttcctgtcaatttgatattccaacgacc-------cctcttacattttgatttctgagatcactattggc |
48856880 |
T |
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| Q |
213 |
ggatcttgttctaaataggaagtgagtgtctgcatttgacttgttaagtatttatgctaccattctaaacatgtcttgctcacgtcttaattgcaaggac |
312 |
Q |
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| T |
48856881 |
tgatcttgttctaaataggaagtgagtgtctgcatttgacttgttaagtatttatgctaccattctaaacatgttttgctcacgtcttaattgcaaggac |
48856980 |
T |
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| Q |
313 |
tgaagtcgtcaaatattgaggatttaatcttctcagttaatatgatacttggaggt |
368 |
Q |
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| T |
48856981 |
tgaagtcgtcaaatattgaggatttaatcttctcagttaatatgatacttggaggt |
48857036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 370 - 507
Target Start/End: Original strand, 48866154 - 48866291
Alignment:
| Q |
370 |
ttgaattagatgccaatccatgttggctgctgctgtggatggaatgtaaggctaaacaatttgtcaagtcctgtgcttttgttctttcttgtaagtttct |
469 |
Q |
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| T |
48866154 |
ttgaagtagatgccaatccatgttggctgctgctgtggatggaatgtaaggctcaacaatttgtcaagtcctgtgcttttgttctttcttgtaagtttct |
48866253 |
T |
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| Q |
470 |
ctggtatatgactatatgactgtagcacagataatgaa |
507 |
Q |
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| T |
48866254 |
ctggtatatgactatatgactgtagcacagataatgaa |
48866291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 48866270 - 48866327
Alignment:
| Q |
114 |
tgactgtagcacagagaatacacattgacttcctgtcaatttgatattccaacgaccc |
171 |
Q |
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| T |
48866270 |
tgactgtagcacagataatgaacattgttttcctgtcaatttgatattccaaccaccc |
48866327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 48873255 - 48873315
Alignment:
| Q |
25 |
aatggaatgtgaagctgtggatgat--tatgggatcagctatgctgataaggtttaataat |
83 |
Q |
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| T |
48873255 |
aatggaatgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaataat |
48873315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 48878559 - 48878619
Alignment:
| Q |
25 |
aatggaatgtgaagctgtggatgat--tatgggatcagctatgctgataaggtttaataat |
83 |
Q |
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| T |
48878559 |
aatggaatgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaataat |
48878619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 48900436 - 48900495
Alignment:
| Q |
30 |
aatgtgaagctgtggatgatta--tgggatcagctatgctgataaggtttaataatttgt |
87 |
Q |
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| T |
48900436 |
aatgtgaagctgtggatgattatctgtgatcagatatgttgataaagcttaataatttgt |
48900495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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