View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_13 (Length: 488)
Name: NF0918_low_13
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 30 - 473
Target Start/End: Original strand, 10290600 - 10291043
Alignment:
| Q |
30 |
gatacatgagcatacaatggaccttacaaggttccttggagacaacaactcgctttgaggaacaatatgttgttgtcttgttctgttcatgattatagtt |
129 |
Q |
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| T |
10290600 |
gatacatgagcatacaatg-accttacaaggttccttggagacaacaactcgctttgaggaacaatatgttgttgtcttgttttgttcatgattatagtt |
10290698 |
T |
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| Q |
130 |
ggattatacatggtgtacatgagttagccaaactgatagaggattttatgcctcaagttctacttgatgatcattcagcttattccaacttccatgcacc |
229 |
Q |
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| T |
10290699 |
ggattatacatggtgtacatgagttagccaaactgatagaggattttatgcctcaagttctacttgatgatcattcagcttattccaacttccatgcacc |
10290798 |
T |
|
| Q |
230 |
tcaaaaaggcccttcctttcttaaaaaatttggcactacaatagtttctctaaacctacacatgtggcttttcctactgctccttcattgcatatgatgc |
329 |
Q |
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| T |
10290799 |
tcaaaaaggcccttcctttcttaaaacatttggcactacaatagtttctctaaacctacacatgtggcttttccttctgctccttcattgcatataatgc |
10290898 |
T |
|
| Q |
330 |
taaagccaccagctgcgtcccctcgtcctcaagccttcattgctaacactgatccttcagctac-aatttgctggtatccagatagtggtgcttcccatc |
428 |
Q |
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| T |
10290899 |
taaagccaccagctgcttcccctcgtcctcaagccttcattgctaacactgatccttcagctacaaatttgctggtatccagatggtggtgcttcccatc |
10290998 |
T |
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| Q |
429 |
acatcacttcagcctatttcttcttgcatctatcactgatagaca |
473 |
Q |
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| T |
10290999 |
acatcacttcagcctatttcttcttgcatctatcactgatagaca |
10291043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 10298995 - 10299206
Alignment:
| Q |
31 |
atacatgagcatacaatggaccttacaaggttccttggagacaacaactcgctttgaggaacaatatgttgttgtcttgttc--------------tgtt |
116 |
Q |
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||||| ||||||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||| || |||| |
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| T |
10298995 |
atacaggagcatagaa-ggaccttacaaggttccttggagacaataactccctttgaggaacaatatgttgctgttttgatcatgcctgaaggatctgtt |
10299093 |
T |
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| Q |
117 |
catgattatagttggattatacatggtgtacatgagttagccaaactgatagaggattttatgcctcaagttctacttgatgatcattcagcttattcca |
216 |
Q |
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| T |
10299094 |
catggttatagttggattatacatggtgtacatgagttagctaaactgatagaggattctgtgcctcaagttccacttgatgatcattcaactacttcca |
10299193 |
T |
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| Q |
217 |
acttccatgcacc |
229 |
Q |
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|||||| |||||| |
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| T |
10299194 |
acttccttgcacc |
10299206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 9746787 - 9746708
Alignment:
| Q |
30 |
gatacatgagcatacaatggaccttacaaggttccttggagacaacaactcgctttgaggaacaatatgttgttgtcttgttc |
112 |
Q |
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|||||| ||||| |||| ||| ||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
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| T |
9746787 |
gatacaggagcagacaa-ggatcttacaaggttccttggagacaacaactccc--tgtggaacaatatgttgttgtcttgttc |
9746708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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