View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0918_low_17 (Length: 436)

Name: NF0918_low_17
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0918_low_17
NF0918_low_17
[»] chr7 (3 HSPs)
chr7 (108-393)||(12105841-12106129)
chr7 (131-241)||(10675933-10676046)
chr7 (264-320)||(10675523-10675579)
[»] scaffold0233 (1 HSPs)
scaffold0233 (7-109)||(17435-17540)
[»] chr5 (5 HSPs)
chr5 (23-109)||(26791845-26791931)
chr5 (7-109)||(26729265-26729369)
chr5 (7-109)||(26745413-26745516)
chr5 (7-109)||(26777957-26778062)
chr5 (58-109)||(26834466-26834517)
[»] scaffold0416 (1 HSPs)
scaffold0416 (7-109)||(7675-7780)
[»] scaffold0093 (1 HSPs)
scaffold0093 (23-106)||(20822-20905)
[»] scaffold0112 (2 HSPs)
scaffold0112 (25-109)||(17466-17550)
scaffold0112 (7-109)||(26153-26261)
[»] chr3 (8 HSPs)
chr3 (7-106)||(13042253-13042355)
chr3 (7-106)||(13050330-13050432)
chr3 (55-110)||(30137397-30137452)
chr3 (55-110)||(30143526-30143581)
chr3 (55-110)||(30146948-30147003)
chr3 (18-109)||(12109441-12109532)
chr3 (55-110)||(30132579-30132634)
chr3 (55-109)||(30069338-30069392)
[»] scaffold0759 (1 HSPs)
scaffold0759 (8-109)||(2032-2137)
[»] chr2 (1 HSPs)
chr2 (206-276)||(405155-405225)
[»] chr6 (3 HSPs)
chr6 (73-110)||(35162546-35162583)
chr6 (348-384)||(10116043-10116078)
chr6 (58-110)||(17279119-17279171)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 108 - 393
Target Start/End: Complemental strand, 12106129 - 12105841
Alignment:
Q  108 aacacagaaattctatcaaactcaccgctgatctaaacatatacttagtgtctaccttc---aacatgttttctatttatctcttaattaataatactaa 204  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||   |||||||||||| |||||||||||||||||||||||||    
T  12106129 aacacagaaattctaccaaactcaccgctgatctaaacatgcacttagtgtctaccttcttcaacatgttttctgtttatctcttaattaataatactaa 12106030  T
Q  205 tttaagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacactaccgttttaaaattaaccggttattca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12106029 tttaagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacactaccgttttaaaattaaccggttattca 12105930  T
Q  305 ttccttatgcagcaaataactaatgtcaataaaccaaatctgcaaaaagatcatgcaagtaaaaagctaaatcaattaaggataaattt 393  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12105929 ttccttatgcagcaaataactaatgtcaataaaccaaatcttcaaaaagatcatgcaagtaaaaagctaaatcaattaaggataaattt 12105841  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 10675933 - 10676046
Alignment:
Q  131 accgctgatctaaacatatacttagtgtctaccttc---aacatgttttctatttatctcttaattaataatactaatttaagggtccttcatcgacatt 227  Q
    ||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||||    
T  10675933 accgctgatctaaacatgtacttagtgtctaccttcttcaacatgttttctatttatctcttaattaatgataataatttaagggtccttcactgacatt 10676032  T
Q  228 tcaaaattgaccaa 241  Q
     ||||| |||||||    
T  10676033 gcaaaagtgaccaa 10676046  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 10675523 - 10675579
Alignment:
Q  264 atgcctgctacactaccgttttaaaattaaccggttattcattccttatgcagcaaa 320  Q
    |||||| | |||||||| ||||||||||||| | |||| |||||||| |||||||||    
T  10675523 atgcctacaacactacccttttaaaattaactgattatacattccttgtgcagcaaa 10675579  T

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Target: scaffold0233 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 17540 - 17435
Alignment:
Q  7 agatgaacgcaatgttaaaaaa---tatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaa 102  Q
    |||||| |||||||||||||||   ||||||||||||||||||| || ||| |||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  17540 agatgagcgcaatgttaaaaaaaaatatacatacagaatatggtgagcatg-aagacagccaaagtagagagcttaacataagacattgtttgatcaaaa 17442  T
Q  103 gaaagaa 109  Q
    |||||||    
T  17441 gaaagaa 17435  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 26791931 - 26791845
Alignment:
Q  23 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 109  Q
    |||||||||||||||||||| |||| || ||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  26791931 aaaaaatatacatacagaatgtggtgagcatg-aagacagccaaattagcaagcttaacataagtcattgtttgatcaaaagaaagaa 26791845  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 26729369 - 26729265
Alignment:
Q  7 agatgaacgcaatgttaaaaaa--tatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaag 103  Q
    |||||||| |||||||||||||  |||||||||||||| |||| || ||| |||||||||||| ||||||||||||||||||||||| |||||||||||     
T  26729369 agatgaacacaatgttaaaaaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtagcgagcttaacataagtcattctttgatcaaaat 26729271  T
Q  104 aaagaa 109  Q
    ||||||    
T  26729270 aaagaa 26729265  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 26745516 - 26745413
Alignment:
Q  7 agatgaacgcaatgttaaaaaat-atacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaaga 104  Q
    |||||||  |||| ||||||||| ||||||||||||||| || || ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  26745516 agatgaatacaattttaaaaaattatacatacagaatatagtgagcatg-aagacagccaaagtagcaagcttaacataagtcattgtttgatcaaaaga 26745418  T
Q  105 aagaa 109  Q
    |||||    
T  26745417 aagaa 26745413  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 26777957 - 26778062
Alignment:
Q  7 agatgaacgcaatgttaaaaaa---tatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaa 102  Q
    |||||| |||||||||||||||   |||||||||||||| |||| || ||| |||||||||||| || | ||||||||||||||||||||||||||||||    
T  26777957 agatgagcgcaatgttaaaaaaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtaacaagcttaacataagtcattgtttgatcaaaa 26778055  T
Q  103 gaaagaa 109  Q
    |||||||    
T  26778056 gaaagaa 26778062  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 26834517 - 26834466
Alignment:
Q  58 acagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 109  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  26834517 acagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaagaa 26834466  T

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Target: scaffold0416 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 7675 - 7780
Alignment:
Q  7 agatgaacgcaatgttaaaaaa---tatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaa 102  Q
    |||||| |||||||||||||||   |||||||||||||| |||| || ||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  7675 agatgagcgcaatgttaaaaaaaaatatacatacagaatgtggtgagcatg-aagacagccaaattagcaagcttaacataagtcattgtttgatcaaaa 7773  T
Q  103 gaaagaa 109  Q
     ||||||    
T  7774 taaagaa 7780  T

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Target: scaffold0093 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 20905 - 20822
Alignment:
Q  23 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaa 106  Q
    |||||||||||||||||||| |||| || ||| |||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  20905 aaaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtaacaagcttaacataagtcattgtttgatcaaaagaaa 20822  T

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Target: scaffold0112 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 17466 - 17550
Alignment:
Q  25 aaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 109  Q
    |||||||||||||| |||||||| || ||| |||||||||||| || | || ||||||||||||||||||||||||||||||||||    
T  17466 aaaatatacatacaaaatatggtgagcatg-aagacagccaaagtaacaagtttaacataagtcattgtttgatcaaaagaaagaa 17550  T

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Target: scaffold0112; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 26153 - 26261
Alignment:
Q  7 agatgaacgcaatgttaa--aaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtca----ttgtttgatca 99  Q
    |||||| |||||||||||  |||||||||||||||||| |||| || ||| ||||||||| || || | ||||||||||||||||    |||||||||||    
T  26153 agatgagcgcaatgttaagaaaaatatacatacagaatgtggtgagcatg-aagacagccgaagtaacaagcttaacataagtcattgtttgtttgatca 26251  T
Q  100 aaagaaagaa 109  Q
    ||||||||||    
T  26252 aaagaaagaa 26261  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 13042253 - 13042355
Alignment:
Q  7 agatgaacgcaatgttaaaaaa---tatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaa 102  Q
    |||||| |||||||||||||||   |||||||||||||| | || || ||| || ||||||||| |||| ||||||||||||||||||||||||||||||    
T  13042253 agatgagcgcaatgttaaaaaacaatatacatacagaatgtcgtgagcatgaaa-acagccaaagtagcaagcttaacataagtcattgtttgatcaaaa 13042351  T
Q  103 gaaa 106  Q
    ||||    
T  13042352 gaaa 13042355  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 13050330 - 13050432
Alignment:
Q  7 agatgaacgcaatgttaaaaaa---tatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaa 102  Q
    |||||| |||||||||||||||   |||||||||||||| | || || ||| || ||||||||| |||| ||||||||||||||||||||||||||||||    
T  13050330 agatgagcgcaatgttaaaaaacaatatacatacagaatgtcgtgagcatgaaa-acagccaaagtagcaagcttaacataagtcattgtttgatcaaaa 13050428  T
Q  103 gaaa 106  Q
    ||||    
T  13050429 gaaa 13050432  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 30137397 - 30137452
Alignment:
Q  55 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaac 110  Q
    ||||||||||||  ||| |||||||||||||||||||||  |||||||||||||||    
T  30137397 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaac 30137452  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 30143526 - 30143581
Alignment:
Q  55 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaac 110  Q
    ||||||||||||  ||| |||||||||||||||||||||  |||||||||||||||    
T  30143526 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaac 30143581  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 30146948 - 30147003
Alignment:
Q  55 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaac 110  Q
    ||||||||||||  ||| |||||||||||||||||||||  |||||||||||||||    
T  30146948 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaac 30147003  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 12109532 - 12109441
Alignment:
Q  18 atgttaaaaaatatacatacagaatatggtaagatgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 109  Q
    ||||||||| | ||||||||||| | ||||||   | || | ||||||| ||  ||||||||||||||||||||||| |||| |||||||||    
T  12109532 atgttaaaagaaatacatacagagtgtggtaaccaggaatagagccaaagtaatgagcttaacataagtcattgtttaatcagaagaaagaa 12109441  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 30132579 - 30132634
Alignment:
Q  55 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaac 110  Q
    |||||||| |||  ||| |||||||||||||||||||||  |||||||||||||||    
T  30132579 aagacagcaaaaggagcaagcttaacataagtcattgttctatcaaaagaaagaac 30132634  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 30069338 - 30069392
Alignment:
Q  55 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 109  Q
    |||||||| |||  ||| ||||||||||||| ||||| |||||||||||||||||    
T  30069338 aagacagcaaaaggagctagcttaacataagccattgattgatcaaaagaaagaa 30069392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 2137 - 2032
Alignment:
Q  8 gatgaacgcaatgttaaaaaatata--catacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacata--agtcattgtttgatcaaaa 102  Q
    ||||||| ||| |||||||||||||  |||||||||| |||| || ||| |||||||||||| || |||||||||||||  |||||||||||||||||||    
T  2137 gatgaacacaaagttaaaaaatatatacatacagaatgtggtgagcatg-aagacagccaaagtaacgagcttaacatataagtcattgtttgatcaaaa 2039  T
Q  103 gaaagaa 109  Q
     ||||||    
T  2038 taaagaa 2032  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 405225 - 405155
Alignment:
Q  206 ttaagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacac 276  Q
    |||||| ||||||||| ||||||||||| ||||||| ||||| ||| |||||||||  |||||| ||||||    
T  405225 ttaaggatccttcatccacatttcaaaaatgaccaaaaaaccaaaagcttgtctgcatatgcctactacac 405155  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 35162583 - 35162546
Alignment:
Q  73 agcttaacataagtcattgtttgatcaaaagaaagaac 110  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  35162583 agcttaacagaagccattgtttgatcaaaagaaagaac 35162546  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 10116043 - 10116078
Alignment:
Q  348 aaaaagatcatgcaagtaaaaagctaaatcaattaag 384  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10116043 aaaaagatcatgcaagtaaaaa-ctaaatcaattaag 10116078  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 17279119 - 17279171
Alignment:
Q  58 acagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaac 110  Q
    ||||||||| |||| |||||| |||||||||||| |||||  |||||||||||    
T  17279119 acagccaaagtagccagcttagcataagtcattgcttgatggaaagaaagaac 17279171  T

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