View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_19 (Length: 420)
Name: NF0918_low_19
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_19 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 29 - 409
Target Start/End: Complemental strand, 29535720 - 29535340
Alignment:
| Q |
29 |
agaggtagcttaggattaacctgtatcctgtacgtgaactggatttgtaatcatacacgggaacttggactggctttcctgcctttaaatcatgaacatt |
128 |
Q |
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| T |
29535720 |
agaggtagcttaggattaacctgtatcctgtacgtgaactggatttgtaatcatacacgggaacttggactggctttcctgcctttaaatcatgaacatt |
29535621 |
T |
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| Q |
129 |
tcggagcaatgtttcgtagtctgttaagcgtggatctgctcaaagagatataatataggtgaaaatattgtcaaaatatcaaagtatgaaatgagagtga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29535620 |
tcggagcaatgtttcgtagtctgttaagcgtggatctgctcaaagagatataatataggtgaaaatattgtcaaaatatcaaagtatgaaatgagagtga |
29535521 |
T |
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| Q |
229 |
tacagagaaatgttattctgcggatcaggtaatctatcgttgcatcaacatactaatatcctccatgcatgagcaacttctatcatgctaaccattttaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29535520 |
tacagagaaatgttattctgcggatcaggtaatctatcgttgcatcaacatactaatatcctccatgcatgagcaacttctatcatgctaaccattttaa |
29535421 |
T |
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| Q |
329 |
aattagtgtttactacacaataagtagtcaatgacgaacatgtgaaaaaatacttttggtagaaaaaactagcactttcat |
409 |
Q |
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| T |
29535420 |
aattagtgtttactacacaataagtagtcaatgacgaacatgtgaaaaaatacttttggtagaaaaaactagcactttcat |
29535340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 28073014 - 28072891
Alignment:
| Q |
44 |
ttaacctgtatcctgtacgtgaactggatttgtaatcatacacgggaacttggactggctttcctgcctttaaatcatgaacatttcggagcaatgtttc |
143 |
Q |
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| T |
28073014 |
ttaacctgtatcctacgcgtgaactggacttgaaatcatatatcggaacctggaccgtcttcccttcctttaaatcttgtaaattctggagcaatgtatc |
28072915 |
T |
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| Q |
144 |
gtagtctgttaagcgtggatctgc |
167 |
Q |
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||||| ||||||||||||||||| |
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| T |
28072914 |
atagtcagttaagcgtggatctgc |
28072891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 19469 - 19542
Alignment:
| Q |
94 |
tggactggctttcctgcctttaaatcatgaacatttcggagcaatgtttcgtagtctgttaagcgtggatctgc |
167 |
Q |
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| T |
19469 |
tggactgtcttcccttcctttaaatcttgtaaattctggagcaatgtgtcatagtcagttaagcgtggatctgc |
19542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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