View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0918_low_20 (Length: 412)

Name: NF0918_low_20
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0918_low_20
NF0918_low_20
[»] chr3 (24 HSPs)
chr3 (80-268)||(36278569-36278755)
chr3 (260-366)||(36278928-36279034)
chr3 (282-361)||(55388071-55388150)
chr3 (282-366)||(2591625-2591709)
chr3 (282-362)||(2592052-2592132)
chr3 (286-362)||(17701964-17702040)
chr3 (280-363)||(52316975-52317058)
chr3 (283-366)||(48572984-48573067)
chr3 (280-362)||(17700514-17700596)
chr3 (280-366)||(34263801-34263887)
chr3 (282-366)||(47118092-47118176)
chr3 (282-362)||(33428480-33428560)
chr3 (282-362)||(45600983-45601063)
chr3 (298-361)||(48808380-48808443)
chr3 (316-366)||(11773092-11773142)
chr3 (282-362)||(52318362-52318442)
chr3 (275-363)||(53957666-53957753)
chr3 (282-362)||(19114531-19114611)
chr3 (282-362)||(19115191-19115271)
chr3 (281-356)||(49261585-49261660)
chr3 (287-366)||(50753820-50753899)
chr3 (321-359)||(19331145-19331183)
chr3 (328-362)||(48574504-48574538)
chr3 (64-93)||(36278520-36278549)
[»] chr5 (15 HSPs)
chr5 (282-362)||(8074449-8074529)
chr5 (280-366)||(9538090-9538176)
chr5 (280-362)||(2464665-2464747)
chr5 (282-362)||(4592859-4592939)
chr5 (282-362)||(546081-546160)
chr5 (282-362)||(21069287-21069367)
chr5 (282-354)||(40612712-40612784)
chr5 (281-359)||(28591162-28591240)
chr5 (280-362)||(2466819-2466901)
chr5 (282-354)||(13651173-13651244)
chr5 (282-366)||(25590429-25590512)
chr5 (279-362)||(18400185-18400268)
chr5 (311-361)||(19182977-19183027)
chr5 (321-362)||(544685-544726)
chr5 (322-366)||(19186261-19186305)
[»] chr2 (17 HSPs)
chr2 (286-362)||(32764940-32765016)
chr2 (281-366)||(17330271-17330356)
chr2 (285-366)||(31090165-31090246)
chr2 (282-366)||(24458058-24458142)
chr2 (282-362)||(32766284-32766364)
chr2 (283-366)||(24459487-24459570)
chr2 (282-362)||(31091572-31091652)
chr2 (286-366)||(2910102-2910182)
chr2 (283-366)||(7073638-7073721)
chr2 (285-365)||(40000376-40000456)
chr2 (282-362)||(39016424-39016506)
chr2 (287-363)||(34037717-34037793)
chr2 (327-362)||(14704049-14704084)
chr2 (282-366)||(21733812-21733899)
chr2 (279-356)||(38854784-38854861)
chr2 (282-363)||(39015003-39015084)
chr2 (282-362)||(5915037-5915117)
[»] chr1 (13 HSPs)
chr1 (279-362)||(10332981-10333064)
chr1 (281-363)||(32665814-32665896)
chr1 (282-359)||(9339644-9339721)
chr1 (279-365)||(52439474-52439560)
chr1 (277-366)||(7945595-7945684)
chr1 (281-366)||(5782411-5782496)
chr1 (282-366)||(10333227-10333311)
chr1 (298-362)||(7944169-7944233)
chr1 (327-366)||(9341066-9341105)
chr1 (285-366)||(6612420-6612501)
chr1 (321-366)||(52440600-52440645)
chr1 (280-366)||(3117645-3117731)
chr1 (281-362)||(534602-534683)
[»] chr7 (20 HSPs)
chr7 (280-362)||(43457453-43457535)
chr7 (280-365)||(48647485-48647570)
chr7 (282-366)||(7258273-7258357)
chr7 (277-361)||(45583677-45583761)
chr7 (286-362)||(48646051-48646127)
chr7 (283-366)||(44333138-44333221)
chr7 (285-366)||(30925049-30925130)
chr7 (281-362)||(35729131-35729212)
chr7 (282-359)||(48777254-48777331)
chr7 (282-362)||(44334494-44334574)
chr7 (281-362)||(7259729-7259810)
chr7 (285-366)||(46286504-46286585)
chr7 (282-366)||(35727697-35727781)
chr7 (282-362)||(42477379-42477459)
chr7 (294-366)||(8374924-8374996)
chr7 (286-354)||(21062819-21062887)
chr7 (286-366)||(34704911-34704991)
chr7 (282-366)||(48788713-48788797)
chr7 (300-366)||(10899114-10899180)
chr7 (329-366)||(33607664-33607701)
[»] chr8 (9 HSPs)
chr8 (277-362)||(35177388-35177473)
chr8 (281-363)||(1953014-1953095)
chr8 (282-362)||(32898490-32898570)
chr8 (282-362)||(35178849-35178929)
chr8 (282-362)||(41753996-41754076)
chr8 (286-363)||(5965486-5965563)
chr8 (283-362)||(10407629-10407708)
chr8 (274-361)||(41754841-41754927)
chr8 (329-366)||(45476207-45476244)
[»] chr6 (2 HSPs)
chr6 (282-366)||(30747997-30748081)
chr6 (281-357)||(5265196-5265272)
[»] scaffold0034 (1 HSPs)
scaffold0034 (283-362)||(116054-116133)
[»] chr4 (9 HSPs)
chr4 (282-361)||(42278047-42278126)
chr4 (286-362)||(47874566-47874642)
chr4 (282-356)||(53771100-53771174)
chr4 (281-362)||(31844719-31844800)
chr4 (281-361)||(54574422-54574502)
chr4 (283-362)||(47878529-47878608)
chr4 (277-362)||(44158497-44158582)
chr4 (282-356)||(31845006-31845080)
chr4 (282-366)||(19051272-19051356)
[»] scaffold0039 (3 HSPs)
scaffold0039 (287-362)||(74358-74433)
scaffold0039 (284-362)||(79073-79151)
scaffold0039 (282-363)||(79727-79808)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 80 - 268
Target Start/End: Original strand, 36278569 - 36278755
Alignment:
Q  80 tatggtatcatgctgaaattatataattccttgtaattcaatatatatcgtataaattacgtgcttcataaacctttcataagtagcatttagattatag 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  36278569 tatggtatcatgctgaaattatataattccttgtaattcaatat--atcgtataaattacgtgcatcataaacctttcataagtagcatttggattatag 36278666  T
Q  180 ccactagtactaatatattagcaaaatacaaagnnnnnnncaattcatgttcagtgttacgaagtaaagacaaatcatgacaaatttta 268  Q
    ||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36278667 ccattagtactaatatattagcaaaatacaaagaaaaaaacaattcatgttcagtgttacgaagtaaagacaaatcatgacaaatttta 36278755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 36278928 - 36279034
Alignment:
Q  260 caaattttatcatatttaaatagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataa 359  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  36278928 caaattttatcatatttaaatggagcaaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataa 36279027  T
Q  360 gtctctg 366  Q
    |||||||    
T  36279028 gtctctg 36279034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 55388071 - 55388150
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagt 361  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  55388071 gagcaaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagt 55388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 366
Target Start/End: Original strand, 2591625 - 2591709
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||| |||||||||||||| ||||||| | ||||| |||||||||||| ||||||||||||||||| |||||||||    
T  2591625 gagcaaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctg 2591709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 2592132 - 2592052
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| |||||||||| ||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  2592132 gagcaaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 2592052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 17702040 - 17701964
Alignment:
Q  286 aaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  17702040 aaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtc 17701964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 52316975 - 52317058
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtct 363  Q
    ||||||||||| ||| ||||||| |||||| ||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||    
T  52316975 tagagcaaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtct 52317058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 48572984 - 48573067
Alignment:
Q  283 agcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||||| ||| |||||||| | |||| |||||| ||| |||||||||||| ||||||||||||||||||||| |||||    
T  48572984 agcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctg 48573067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 17700514 - 17700596
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||||| |||||||  ||| | |||| |||||||||| |||||| ||||| |||||||||||||||||||||||    
T  17700514 tagagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtc 17700596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 34263801 - 34263887
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||||| ||| | |||||| | |||| |||| ||||| | |||||| |||||||||||||||||||||||||||||||    
T  34263801 tagagcaaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctg 34263887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 47118176 - 47118092
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||| |||| |||||||||||| | |||| |||||||||||||| ||||| || |||||||||||| |||| |||||||||    
T  47118176 gagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctg 47118092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 33428560 - 33428480
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||| |||| ||| |||||||| | |||| |||||||||| |||||||||||| |||| |||||||||||| |||||    
T  33428560 gagcaaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtc 33428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 45601063 - 45600983
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||| |||| |||||||||||| | ||   |||| ||||| |||||||||||||||||||||||||||||| |||||    
T  45601063 gagcaaatcgtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtc 45600983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 48808380 - 48808443
Alignment:
Q  298 tagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagt 361  Q
    |||||||||||| ||||||||| ||| | ||||||| |||| ||||||||||||||||||||||    
T  48808380 tagtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagt 48808443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 11773142 - 11773092
Alignment:
Q  316 ctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctg 11773092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 52318442 - 52318362
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||| ||| |||| | ||||  ||| ||||| |||| ||||||| |||||||||||||||||||||||    
T  52318442 gagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtc 52318362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 53957666 - 53957753
Alignment:
Q  275 ttaaatagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtct 363  Q
    |||| ||||||||||||||| |||||| | ||||| |||| |||| ||| | |||||| ||||| |||||| |||||||||||||||||    
T  53957666 ttaattagagcaaatagtcactttagtacttgattctgcaactcgctgttacataggttcctgactcagga-taaatacaaataagtct 53957753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 19114531 - 19114611
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||  ||| |||||||||||| | ||||  ||||||||| | |||||||||| ||| ||||||||||||| |||||    
T  19114531 gagcaaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtc 19114611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 19115271 - 19115191
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| |||||| | ||| | |||| |||| ||||| |||||||| | | ||||||||||||||||| |||||    
T  19115271 gagcaaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtc 19115191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 49261660 - 49261585
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaa 356  Q
    |||||||||||||| |||||||| | |||   ||  | ||||||| |||||||||||| |||||||||||||||||    
T  49261660 agagcaaatagtcactttagtccataattccacacattgttgtcacataggtccctgactcaggattaaatacaaa 49261585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 366
Target Start/End: Original strand, 50753820 - 50753899
Alignment:
Q  287 aatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||| ||||||||||   | |||| |||| ||||| |||||||||| ||||||||||||||| ||| |||| ||||    
T  50753820 aatagtcactttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctg 50753899  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 19331145 - 19331183
Alignment:
Q  321 tgtcatataggtccctgattcaggattaaatacaaataa 359  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  19331145 tgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 48574538 - 48574504
Alignment:
Q  328 taggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||| |||||||||||||||||||||||    
T  48574538 taggtccctgactcaggattaaatacaaataagtc 48574504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 93
Target Start/End: Original strand, 36278520 - 36278549
Alignment:
Q  64 catttgtcatgtattgtatggtatcatgct 93  Q
    ||||||||||||||||||||||||||||||    
T  36278520 catttgtcatgtattgtatggtatcatgct 36278549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 8074449 - 8074529
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||    
T  8074449 gagcaaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtc 8074529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 366
Target Start/End: Complemental strand, 9538176 - 9538090
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||||| ||| |||||||| | |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  9538176 tagagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctg 9538090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 2464665 - 2464747
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||| ||| ||| |||||||||||||||||||    
T  2464665 tagagcaaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtc 2464747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 4592859 - 4592939
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||| ||| |||||||| ||| |||||||||||||||||||    
T  4592859 gagcaaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtc 4592939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 546160 - 546081
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||||||||| |||| ||||||||| ||||| |||||||||||| ||||||||||||||| |||||||    
T  546160 gagcaaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtc 546081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 21069287 - 21069367
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||||||| |||| | |||| |||||||||| | ||||| |||| |||||||||||||||||||||||    
T  21069287 gagcaaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtc 21069367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 40612784 - 40612712
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaataca 354  Q
    ||||||||||||| |||||||||||||| ||||||||  |||||  ||||||||||| |||||||||||||||    
T  40612784 gagcaaatagtcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaataca 40612712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 359
Target Start/End: Complemental strand, 28591240 - 28591162
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataa 359  Q
    |||||||||||||| |||  ||||||| | |||| |||| ||||| |||||||||||| ||||||||||||||||||||    
T  28591240 agagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataa 28591162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 2466901 - 2466819
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||||| ||| ||| |||| | |||| |||| | ||| |||||||  ||||||||||||||||| |||||||||    
T  2466901 tagagcaaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtc 2466819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 13651244 - 13651173
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaataca 354  Q
    ||||||||||||| |||||||| ||| | |||| || | ||||| |||||||||||| |||||||||||||||    
T  13651244 gagcaaatagtcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 366
Target Start/End: Original strand, 25590429 - 25590512
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||| |||  |  |||| | |||| |||| ||||| |||||||||||| || ||||||||||||||||||||||||    
T  25590429 gagcaaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctg 25590512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 18400185 - 18400268
Alignment:
Q  279 atagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||| |||| |||| |||||||||||| | |||| |||  ||||| |||||||| ||| ||||||||||||| ||| |||||    
T  18400185 atagagtaaatggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtc 18400268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 19182977 - 19183027
Alignment:
Q  311 tgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagt 361  Q
    |||| |||| ||||| ||||||| |||| ||||||||||||||||||||||    
T  19182977 tgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagt 19183027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 544685 - 544726
Alignment:
Q  321 tgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||| ||||||| |||| |||||||||||||||||||||||    
T  544685 tgtcagataggtctctgactcaggattaaatacaaataagtc 544726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 19186305 - 19186261
Alignment:
Q  322 gtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||| |||||||||||| | ||||||||||||||| |||||||||    
T  19186305 gtcacataggtccctgacttaggattaaatacaaacaagtctctg 19186261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 32764940 - 32765016
Alignment:
Q  286 aaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||    
T  32764940 aaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtc 32765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 17330356 - 17330271
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||||||  |||||||| ||||| ||||||||  ||||| |||||||||||| |||||||||||||||||||||||||||    
T  17330356 agagcaaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctg 17330271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 31090165 - 31090246
Alignment:
Q  285 caaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||| |||||||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||| |||||||||||||    
T  31090165 caaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctg 31090246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 366
Target Start/End: Original strand, 24458058 - 24458142
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| |||  ||||||||||||||||| ||||    
T  24458058 gagcaaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctg 24458142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 32766364 - 32766284
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||| |||||||| | |||| |||||||||| |||||||||||| |||||||||||||||||||||||    
T  32766364 gagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtc 32766284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 24459570 - 24459487
Alignment:
Q  283 agcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||| ||||| ||| |||||||| | |||| |||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  24459570 agcaaagagtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctg 24459487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 31091652 - 31091572
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||| |||||||| | |||| || | ||||| |||||||||||| |||||||||||||||||||||||    
T  31091652 gagcaaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtc 31091572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 2910102 - 2910182
Alignment:
Q  286 aaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||| ||| |||||||  ||||| ||||||||| ||||| |||| ||||||| || ||||||||||||||||||||||||    
T  2910102 aaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctg 2910182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 7073638 - 7073721
Alignment:
Q  283 agcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||||| |||||||| | ||| |||||||   ||||  ||||||| ||||||| ||||||||||||||||||||||||    
T  7073638 agcaaatagtcactttagtccttcattctgcagcttactgtcgcataggtctctgattcgggattaaatacaaataagtctctg 7073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 40000456 - 40000376
Alignment:
Q  285 caaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctct 365  Q
    ||||| |||| ||| |||||||| | |||| |||| ||| | |||| ||||||||| ||||||||||||||||||||||||    
T  40000456 caaattgtcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctct 40000376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 39016506 - 39016424
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgt--catataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||  |||| |  || |||| |||||||||||||||||||||||    
T  39016506 gagcaaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc 39016424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 34037793 - 34037717
Alignment:
Q  287 aatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtct 363  Q
    |||||||| |||||||| ||| | |||| || | ||||||| |||||| | | ||||||||||||||||||||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtct 34037717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 14704049 - 14704084
Alignment:
Q  327 ataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||| |||||||||||||||||||||||    
T  14704049 ataggtccctgactcaggattaaatacaaataagtc 14704084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 21733899 - 21733812
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcag---gattaaatacaaataagtctctg 366  Q
    ||||||||||||| | |||||||||| | || |  ||||||||| | |||||||||| |||    |||||||||||||||||||||||    
T  21733899 gagcaaatagtcactctagtccctgactttgtacatcgttgtcacaaaggtccctgactcatcatgattaaatacaaataagtctctg 21733812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 38854784 - 38854861
Alignment:
Q  279 atagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaa 356  Q
    |||||| ||||||||| ||| |||||||| | | ||  ||||||||||| |||||  ||| |||||||||||||||||    
T  38854784 atagagtaaatagtcactttggtccctgactctacacttcgttgtcataaaggtctttgactcaggattaaatacaaa 38854861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 39015003 - 39015084
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtct 363  Q
    ||||||||| ||| ||| |||||||| | |||| |||| || || |||| ||| ||| ||||||||||||||||||| ||||    
T  39015003 gagcaaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtct 39015084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 5915117 - 5915037
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| |||||||| ||| | |||| |||| | ||| |||||||  ||| |||| |||||||||||| |||||    
T  5915117 gagcaaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtc 5915037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 10332981 - 10333064
Alignment:
Q  279 atagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||||||| |||||||||||| | |||| |||||||||| |||||||| ||||||||||||||||| |||||||||    
T  10332981 atagagcaaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtc 10333064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 32665896 - 32665814
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtct 363  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||| ||||||| |||| ||| ||||||||||||||||||||    
T  32665896 agagcaaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtct 32665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 9339644 - 9339721
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataa 359  Q
    ||||||||||||  |||||||||||||| ||||||||||||| | |||||||||||| ||||||||||||||||||||    
T  9339644 gagcaaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataa 9339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 52439474 - 52439560
Alignment:
Q  279 atagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctct 365  Q
    |||||||||||||||| ||||| |||||||| ||||||||| ||||| ||||||| |||  ||||||||||||||| ||||||||||    
T  52439474 atagagcaaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtctct 52439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 366
Target Start/End: Complemental strand, 7945684 - 7945595
Alignment:
Q  277 aaatagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||| ||||||||| ||||||| |||||||| | |||| |||| ||||| |||||| ||||| |||||||||||||||||||||||||||    
T  7945684 aaattgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctg 7945595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 5782411 - 5782496
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||| ||||||||||||||||| | |||| |||| ||||| ||||||| |||| ||| ||||||||||||| |||||||||    
T  5782411 agagcaaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctg 5782496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 10333311 - 10333227
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||| | || || |||||| ||||||||| ||| | ||||||| |||| ||| |||||||||||||||||||||||    
T  10333311 gagcaaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctg 10333227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 7944169 - 7944233
Alignment:
Q  298 tagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||| |||| |||| ||||| |||||||||||| |||  ||||||||||||||||||    
T  7944169 tagtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtc 7944233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 9341105 - 9341066
Alignment:
Q  327 ataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  9341105 ataggtccctgactcaggattaaatacaaataagtctctg 9341066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 6612420 - 6612501
Alignment:
Q  285 caaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||| |||||||||||| | |||| |||| ||| ||| | ||| |||| ||| ||||||||||||| |||||||||    
T  6612420 caaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctg 6612501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 52440645 - 52440600
Alignment:
Q  321 tgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||    
T  52440645 tgtcacataggtccctgagtcaggattaaatataaataagtctctg 52440600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 3117645 - 3117731
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||||||||||||||||||| | | | ||  ||||| ||| | ||||| |||| ||| ||||||||||||| || ||||||    
T  3117645 tagagcaaatagtcattttagtccctaactcttcacatcgttatcacaaaggtctctgactcaagattaaatacaaagaaatctctg 3117731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 534683 - 534602
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||||||||| ||  |||  | |||| |||| ||| | |||||| | ||||||||||||||||||||| |||||    
T  534683 agagcaaatagtcatttttgtttctggctctgcacctcgctgttacataggttcttgattcaggattaaatacaaacaagtc 534602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 43457453 - 43457535
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||| ||||||||| |||||||||||||| ||||||||| ||||  |||||||||||| |||||||||||||||||||||||    
T  43457453 tagagaaaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtc 43457535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 48647570 - 48647485
Alignment:
Q  280 tagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctct 365  Q
    ||||||||||||||| ||||| |||||||| | ||||||| | ||| |||||||||||| ||||||||||||||||||||||||||    
T  48647570 tagagcaaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctct 48647485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 366
Target Start/End: Original strand, 7258273 - 7258357
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||| ||| |||||||| | | || |||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  7258273 gagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctg 7258357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 277 - 361
Target Start/End: Original strand, 45583677 - 45583761
Alignment:
Q  277 aaatagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagt 361  Q
    |||||||||||||||||| |||||||||||||| ||||| ||| | ||| |||||||||||| |||| |||||||||| ||||||    
T  45583677 aaatagagcaaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagt 45583761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 48646051 - 48646127
Alignment:
Q  286 aaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||| ||| |||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 48646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 44333138 - 44333221
Alignment:
Q  283 agcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||||| ||| |||||||| | |||| |||| ||||| |||||||||||| ||| |||||||||||||||||||||||    
T  44333138 agcaaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctg 44333221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 30925130 - 30925049
Alignment:
Q  285 caaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||| |||| ||||||||| ||||||||   |||| |||||||| ||| |||||||||||||||||||||||||||    
T  30925130 caaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctg 30925049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 35729212 - 35729131
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||| |||||||| ||| | ||||||| |||||||||||||    
T  35729212 agagcaaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtc 35729131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 48777254 - 48777331
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataa 359  Q
    ||||||||||||| ||||||| |||||| ||||||||| ||||| ||| |||||||| ||| ||||||||||||||||    
T  48777254 gagcaaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataa 48777331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 44334574 - 44334494
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| |||||| ||||||| ||||||||| ||| | |||||||||||| ||| ||||||||| |||||||||    
T  44334574 gagcaaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtc 44334494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 7259810 - 7259729
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||| ||||||||| |||| || |||||| || |||||| ||||| || |||| ||||||||||||||||||||||||||||    
T  7259810 agagtaaatagtcactttaatcgctgattttgtagctcgctgtcacatgggtctctgattcaggattaaatacaaataagtc 7259729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 46286504 - 46286585
Alignment:
Q  285 caaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||| |||||||||||| | | || |||| ||| | | |||||||||| |||||||||||||||||||||||||||    
T  46286504 caaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctg 46286585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 366
Target Start/End: Original strand, 35727697 - 35727781
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||| ||||| |||  ||||||| | |||| |||| ||||| |||||||||||| ||||||||||||| |||||||||||||    
T  35727697 gagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctg 35727781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 42477379 - 42477459
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||| ||| ||| |||| ||| | |||| |||||||||  ||||||| |||| |||||||||||||||||||||||    
T  42477379 gagcaaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc 42477459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 366
Target Start/End: Original strand, 8374924 - 8374996
Alignment:
Q  294 attttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||||||||| | |||| |||| ||||| ||||||| |||| |||| |||||||||||| |||| ||||    
T  8374924 attttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctg 8374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 21062819 - 21062887
Alignment:
Q  286 aaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaataca 354  Q
    |||| |||| |||||||||||| | |||| |||| ||||||| |||||| ||| |||||||||||||||    
T  21062819 aaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaataca 21062887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 34704911 - 34704991
Alignment:
Q  286 aaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||| ||||||| | || | |||| |||||||||| | ||| | |||| ||||||||||||||||| |||||||||    
T  34704911 aaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctg 34704991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 48788797 - 48788713
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||| |||  ||| ||| | |||| |||| ||||| |||||||||||| |||  |||||||| |||||||||||||    
T  48788797 gagcaaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctg 48788713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 10899180 - 10899114
Alignment:
Q  300 gtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||| | |||| |||| ||||| |||| ||| |||  ||||||||||||||||||||||||||    
T  10899180 gtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctg 10899114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 33607701 - 33607664
Alignment:
Q  329 aggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  33607701 aggtctctgattcaggattaaatacaaagaagtctctg 33607664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 35177388 - 35177473
Alignment:
Q  277 aaatagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||| ||||||||||||| |||||||||| ||| ||||||||| ||||| |||||||||||| || ||||||||||||||||||||    
T  35177388 aaattgagcaaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtc 35177473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 1953095 - 1953014
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtct 363  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||||| || |||| | ||||||| ||||||||||||||    
T  1953095 agagtaaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtct 1953014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 32898570 - 32898490
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| |||||||||||| | |||| |||  ||||| |||||||||||| | |||||||||||||||||||||    
T  32898570 gagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtc 32898490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 35178929 - 35178849
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||| |||||||| | ||||  ||| |||||||| ||||||||| |||||||||||||||||||||||    
T  35178929 gagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtc 35178849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 41753996 - 41754076
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| ||||||||||| || |||| || | ||||| |||||||||||| ||||||||||||| ||| |||||    
T  41753996 gagcaaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtc 41754076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 5965563 - 5965486
Alignment:
Q  286 aaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtct 363  Q
    |||||||||||| |||| |||||| | || |||||||||| | | |||||||| ||||||||||||||||| ||||||    
T  5965563 aaatagtcatttcagtctctgattttacacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtct 5965486  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 10407708 - 10407629
Alignment:
Q  283 agcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||| ||||||| |||||| ||||||||  ||||| |||||||  ||| | ||||||||| |||||||||||    
T  10407708 agcaaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtc 10407629  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 41754927 - 41754841
Alignment:
Q  274 tttaaatagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagt 361  Q
    |||| |||||||||||||||| |||| ||| ||||| |||| |||| ||||| |||| || |||| ||||||||||||||||| ||||    
T  41754927 tttatatagagcaaatagtcactttaatcc-tgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagt 41754841  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 45476207 - 45476244
Alignment:
Q  329 aggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  45476207 aggtccatgattcagaattaaatacaaataagtctctg 45476244  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 366
Target Start/End: Original strand, 30747997 - 30748081
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    ||||||||||||| |||||||||||||| |||| |||| ||||| |||||||||||| | ||||||||||||||| |||||||||    
T  30747997 gagcaaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctg 30748081  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 5265196 - 5265272
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaat 357  Q
    |||| |||||||||||||||| | ||||| |||| |||||||| | |  |||| |||||||| |||||||| |||||    
T  5265196 agagtaaatagtcattttagttcttgattctgcacctcgttgttacaatggtctctgattcaagattaaatgcaaat 5265272  T

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Target: scaffold0034 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 116054 - 116133
Alignment:
Q  283 agcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||| |||||| ||| ||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  116054 agcaaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 116133  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 42278047 - 42278126
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagt 361  Q
    ||||||||||||| |||||||| ||||| ||||||| | ||||| |||||||||||| || |||||||||||||||||||    
T  42278047 gagcaaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagt 42278126  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 47874566 - 47874642
Alignment:
Q  286 aaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||| ||||||| |||||| ||||||||| | ||| |||||||||||| ||| |||||||||||||||||||    
T  47874566 aaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtc 47874642  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 53771174 - 53771100
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaa 356  Q
    |||||||| |||| |||||||||||| | |||| |||||||||| |||||||||||| |||| ||||||||||||    
T  53771174 gagcaaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaa 53771100  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 31844719 - 31844800
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||||| ||||||||||   | |||| |||| ||||| |||||||||||| ||||||||||||||||| |||||    
T  31844719 agagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtc 31844800  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 54574422 - 54574502
Alignment:
Q  281 agagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagt 361  Q
    ||||||||||||||||||  | ||| | | |||| |||| ||||| ||||||| |||| ||||||||||||||||||||||    
T  54574422 agagcaaatagtcattttgcttcctcactctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagt 54574502  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 47878608 - 47878529
Alignment:
Q  283 agcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||||||| |||  ||||||| | |||| |||| ||| | |||||||||||| || ||||||||||||||||||||    
T  47878608 agcaaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtc 47878529  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 44158497 - 44158582
Alignment:
Q  277 aaatagagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||||| |||| ||||| ||| || | |||| |||||||| | | |||| ||||| ||||||||||||||||| |||||    
T  44158497 aaatagagcaaatggtcaatttagcccccgactctgcacctcgttgttacagaggttcctgactcaggattaaatacaaagaagtc 44158582  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 31845080 - 31845006
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaa 356  Q
    ||||||||| ||| ||||||   ||||| |||| || ||||||||||||||  |||| |||||||||||||||||    
T  31845080 gagcaaatactcactttagtttttgattttgcatcttgttgtcatataggtttctgactcaggattaaatacaaa 31845006  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 19051356 - 19051272
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtctctg 366  Q
    |||||||| |||| |||||||||||| | | || ||||||| || | ||||| |||| ||  ||||||||||||| |||||||||    
T  19051356 gagcaaatggtcactttagtccctgactctacacctcgttggcacaaaggtcactgactcgagattaaatacaaagaagtctctg 19051272  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 74433 - 74358
Alignment:
Q  287 aatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    |||||||| |||||||||||| | |||| |||  ||||| |||||||||| | ||| ||||||||||||| |||||    
T  74433 aatagtcagtttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtc 74358  T

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Target: scaffold0039; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 79073 - 79151
Alignment:
Q  284 gcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtc 362  Q
    ||||||||||| |||||| ||||| | |||| |||| ||||| |||||||| ||| ||| ||||||||| ||| |||||    
T  79073 gcaaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtc 79151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 79808 - 79727
Alignment:
Q  282 gagcaaatagtcattttagtccctgattatgcagctcgttgtcatataggtccctgattcaggattaaatacaaataagtct 363  Q
    ||||||||||||| |||| ||||||| |  ||| |||||||| | ||| || ||||| ||| ||||||||||||| ||||||    
T  79808 gagcaaatagtcactttaatccctgactcggcacctcgttgttacataagttcctgactcatgattaaatacaaagaagtct 79727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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