View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_24 (Length: 396)
Name: NF0918_low_24
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 100 - 332
Target Start/End: Complemental strand, 39425092 - 39424869
Alignment:
| Q |
100 |
tttaatggctagaaatccacattttttgatgaataagtgaaatgtttgaagttcgaaccaccaactcttacatatattatacaaagtctatatcaaccga |
199 |
Q |
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| T |
39425092 |
tttagtggctataaatccaccttttttgatgaataagttaaatgtttgaagttcgaaccaccaactcctacatatattatacaaagtctatatcaaccga |
39424993 |
T |
|
| Q |
200 |
gctaaactc--aaaattaattctnnnnnnnnnnnngttattaaactaactataattaccttatccatagatcaagaggaggaggcaatcatatagattat |
297 |
Q |
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| T |
39424992 |
gctaaactcgtaggattaattctaaaaaaaat----ttattaaactaactataattaccttatccatggatcaagaggaggaggcaatca-------tat |
39424904 |
T |
|
| Q |
298 |
agatccaaatagtcaacatataatagttcatctca |
332 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39424903 |
agatccaaatagtcaacatataatagttcatctca |
39424869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 29321621 - 29321673
Alignment:
| Q |
105 |
tggctagaaatccacattttttgatgaataagtgaaatgtttgaagttcgaac |
157 |
Q |
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| T |
29321621 |
tggctagaaattcacttttttaaatgaataagtgaagtgattgaagttcgaac |
29321673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 159
Target Start/End: Complemental strand, 30350595 - 30350565
Alignment:
| Q |
129 |
tgaataagtgaaatgtttgaagttcgaacca |
159 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30350595 |
tgaataagtgaaatgtttgaagttcgaacca |
30350565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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