View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0918_low_29 (Length: 360)
Name: NF0918_low_29
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 261
Target Start/End: Complemental strand, 37990186 - 37989962
Alignment:
| Q |
37 |
gtgtatatgtgtatgcgtgggtgcatgccatggatgttggaatttgtggttgttaacagtttattttttgatgctccatgtgccaaccttttatcgcata |
136 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37990186 |
gtgtatctgtgtatgcgtgggtgcacgccatggatgtaggaatttgtggttgttaacaatttattttttgatgctccatgtgccaaccttttatcgcatg |
37990087 |
T |
|
| Q |
137 |
tgtaggtagttagttgttaaattaatattcactttattgttctatttactcattcgttcgaatttgtccacaattttaaatttgtgtgcgtcatactaat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37990086 |
cgtaggtagttagttgttaaattaatattcactttattgttctatttactcattcgttcgaatttgtccacaattttaaatttgtgtacgtcatactaat |
37989987 |
T |
|
| Q |
237 |
tgattacatgaataaattatacact |
261 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
37989986 |
tgattccatgaataaattatacact |
37989962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 596 times since January 2019
Visitors: 6705