View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_31 (Length: 349)
Name: NF0918_low_31
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 30 - 344
Target Start/End: Original strand, 37755251 - 37755565
Alignment:
| Q |
30 |
cttattacaaaatgagatgcctttgattatgcatgctcttaaatcaattcattcaattctcagtgatcttcacataagtaaagaagtaaaaatctcagtc |
129 |
Q |
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| T |
37755251 |
cttattacaaaatgagctgcctttgattatgcatgctcttaaatcaattcattcaattctcagtgatcttcacataagtaaagaagtaaaaatctcggtc |
37755350 |
T |
|
| Q |
130 |
gcatttccacttcaagtcttgaggaagttgaatgcatcacaagaacacgaaattcgtagattactttcatttataaaggaaacgaaatcgtttgtgatta |
229 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37755351 |
gcatttccacttcaagtcttaaggaagttgaatgcatcacaagaacacgaaattcgtagattactttcatttataaaggaaacgaaatcgtttgtgatga |
37755450 |
T |
|
| Q |
230 |
tagaagacaacattgatggagaattaagaatggatgaccattttgttcaaactattatcaaacgcgctaatcttgccacttctgttcttccttgcaaaga |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37755451 |
tagaagacaacattgatggagaattaagaatggatgaccattttgttcaaactattatcaaacgcgctaatcttgccgcttctgttcttccttgcaaaga |
37755550 |
T |
|
| Q |
330 |
tgttcctttgattct |
344 |
Q |
| |
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|||||||||| |||| |
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| T |
37755551 |
tgttcctttggttct |
37755565 |
T |
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