View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_32 (Length: 348)
Name: NF0918_low_32
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 50775700 - 50775394
Alignment:
| Q |
14 |
tactatacagatccgtgtgtagaagtttgaataaaccatcaatttattctttaaactatcatcctctctcaaatttaaaccctaaaatatgtaaatatat |
113 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50775700 |
tactttacagatccgta-gtagaagtttgaataaaccatcagtttattccttaaactatcatcctctctcaaatttaaaccctaaaatatgtaaatacat |
50775602 |
T |
|
| Q |
114 |
taagtaatctttaaagtgtataaaatttatcaatttaatttccactatttaaaaaatttgaagctaaattgaaagaatttcaggtacttgaagtgtttgc |
213 |
Q |
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| T |
50775601 |
taagtaatctttaaagtgtataaaatttatcaatttaatttccacaattaaaaaaatttgaagctaaattgaaagaatttcaggtacttgaagtgtttgc |
50775502 |
T |
|
| Q |
214 |
tcggtgttaagagttgtcttttaacccatataaatataaagttcatgttccataaaaaactattgtagttatgatgatcagcaatgtcactttaatttat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50775501 |
tcggtgttaagagttgtcttttaacccatataaatataaagttcatgttccataaaaaactattgtagttatgatgatcagtaatgtcactttaatttat |
50775402 |
T |
|
| Q |
314 |
gcaaattt |
321 |
Q |
| |
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|||||||| |
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| T |
50775401 |
gcaaattt |
50775394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 27048673 - 27048704
Alignment:
| Q |
43 |
aataaaccatcaatttattctttaaactatca |
74 |
Q |
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| T |
27048673 |
aataaaccatcaatttattctttaaactatca |
27048704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 47475277 - 47475182
Alignment:
| Q |
42 |
gaataaaccatcaatttattctttaaactatcatcctctctcaaatttaaaccctaaaatatgtaaatatattaagtaatctttaaagtgtataaa |
137 |
Q |
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||||||| ||||||||||||| |||||||||| | ||| ||||||||| ||||| ||||||||||| |||||| |||||||| | |||||| |
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| T |
47475277 |
gaataaattatcaatttattctctaaactatcaccgtctatcaaatttagtttctaaactatgtaaatatgataagtagtctttaaattatataaa |
47475182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 9597727 - 9597795
Alignment:
| Q |
41 |
tgaataaaccatcaatttattctttaaactatcatcctctctcaaatttaaaccctaaaatatgtaaat |
109 |
Q |
| |
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||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||| ||| ||||| |
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| T |
9597727 |
tgaataaaccatcaatttactccctaaactatcatcgtctctcaaatttagtccctaaactatataaat |
9597795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 50503996 - 50503946
Alignment:
| Q |
41 |
tgaataaaccatcaatttattctttaaactatcatcctctctcaaatttaa |
91 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||| ||||||||||||||| |
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|
| T |
50503996 |
tgaataaacaatcaatttgatctttaaagtatcattctctctcaaatttaa |
50503946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 36817149 - 36817113
Alignment:
| Q |
39 |
tttgaataaaccatcaatttattctttaaactatcat |
75 |
Q |
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|||||||||||||| |||||| ||||||||||||||| |
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|
| T |
36817149 |
tttgaataaaccattaatttagtctttaaactatcat |
36817113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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