View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0918_low_33 (Length: 344)

Name: NF0918_low_33
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0918_low_33
NF0918_low_33
[»] chr1 (3 HSPs)
chr1 (30-256)||(10033347-10033573)
chr1 (255-337)||(10034274-10034356)
chr1 (255-337)||(10020609-10020689)
[»] chr4 (3 HSPs)
chr4 (30-124)||(41067757-41067851)
chr4 (125-160)||(41067694-41067729)
chr4 (160-250)||(8656683-8656773)
[»] chr3 (3 HSPs)
chr3 (30-124)||(8479391-8479485)
chr3 (160-256)||(2899284-2899380)
chr3 (126-160)||(8479322-8479356)
[»] chr5 (2 HSPs)
chr5 (30-124)||(19936715-19936809)
chr5 (125-160)||(19936843-19936878)
[»] chr2 (2 HSPs)
chr2 (160-250)||(32235006-32235096)
chr2 (160-209)||(30418630-30418679)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 10033347 - 10033573
Alignment:
Q  30 acattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgataccgatgtccgctt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10033347 acattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgatactgatgtccgctt 10033446  T
Q  130 tgtccatttgcaagtctgtctgcacttcatcaatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgc 229  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10033447 tgtccaattgcaagtctgtctgcacttcatcaatctgaagttgcctcttgacttgttgctgctgtttcttagataaaaccggaacaaaaggagcggctgc 10033546  T
Q  230 attttctttatcataagcacgaatacg 256  Q
    |||||||||||||||||||||||||||    
T  10033547 attttctttatcataagcacgaatacg 10033573  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 10034274 - 10034356
Alignment:
Q  255 cgtactttcttacacacgaggcacattttctgatactctaagcctttttcaaaccacccttattgttatgttaacctatgcta 337  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10034274 cgtactttcttacacacgaggcacattttctggtactctaagcctttttcaaaccacccttattgttatgttaacctttgcta 10034356  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 10020609 - 10020689
Alignment:
Q  255 cgtactttcttacacacgaggcacattttctgatactctaagcctttttcaaaccacccttattgttatgttaacctatgcta 337  Q
    |||||||||||||||||||||||||||| ||| |||||||||  | |||||| |||||||||||||||||||| ||| |||||    
T  10020609 cgtactttcttacacacgaggcacatttgctggtactctaag--tctttcaagccacccttattgttatgttatcctttgcta 10020689  T

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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 41067851 - 41067757
Alignment:
Q  30 acattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgataccgatgtc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  41067851 acattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagcatcttttgattgataccgatgtc 41067757  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 41067729 - 41067694
Alignment:
Q  125 cgctttgtccatttgcaagtctgtctgcacttcatc 160  Q
    |||||||||||| |||||||||||||||||||||||    
T  41067729 cgctttgtccatctgcaagtctgtctgcacttcatc 41067694  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 8656683 - 8656773
Alignment:
Q  160 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacg 250  Q
    |||| ||||||||  ||||||||||||||| ||||||||| ||||||||   || |||  |   ||||||||||||||||||||| |||||    
T  8656683 caatttgaagttgtttcttgacttgttgcttctgtttctttgataaaactggaataaattggctggctgcattttctttatcataggcacg 8656773  T

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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 8479485 - 8479391
Alignment:
Q  30 acattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgataccgatgtc 124  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||||  ||||||||||||||||||||||    
T  8479485 acattttcctgtggagttgcgacttctgcatctacaatttcctcaataatatgaacagatgttgaaagcagcatcttttgattgataccgatgtc 8479391  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 2899380 - 2899284
Alignment:
Q  160 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacgaatacg 256  Q
    |||| ||||||||  ||||||| ||||||| ||||||||| ||||||||| ||| |||  |   ||||||||||||||||||||| ||||| |||||    
T  2899380 caatttgaagttgtttcttgacatgttgcttctgtttctttgataaaaccgaaataaattggttggctgcattttctttatcataggcacggatacg 2899284  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 8479356 - 8479322
Alignment:
Q  126 gctttgtccatttgcaagtctgtctgcacttcatc 160  Q
    ||||||||||| |||||||||||||||||||||||    
T  8479356 gctttgtccatctgcaagtctgtctgcacttcatc 8479322  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 19936715 - 19936809
Alignment:
Q  30 acattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgataccgatgtc 124  Q
    |||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  19936715 acattttcttgtggagttgcgacttctgcgtctacagtttcctcaagaacatgaacagatgttgagggcagcatcttttgattgataccgatgtc 19936809  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 19936843 - 19936878
Alignment:
Q  125 cgctttgtccatttgcaagtctgtctgcacttcatc 160  Q
    |||||||||||| |||||||||||||||||||||||    
T  19936843 cgctttgtccatctgcaagtctgtctgcacttcatc 19936878  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 32235006 - 32235096
Alignment:
Q  160 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacg 250  Q
    |||| ||||||||  ||||||||||||||| ||||||||| |||||||||  || |||  |   ||||||||||||||||||||| |||||    
T  32235006 caatttgaagttgtttcttgacttgttgcttctgtttctttgataaaaccagaataaattggctggctgcattttctttatcataggcacg 32235096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 30418679 - 30418630
Alignment:
Q  160 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacc 209  Q
    |||| ||||||||  ||||||||||||||| ||||||||| |||||||||    
T  30418679 caatttgaagttgtttcttgacttgttgcttctgtttctttgataaaacc 30418630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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