View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_34 (Length: 343)
Name: NF0918_low_34
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 100 - 334
Target Start/End: Original strand, 17319792 - 17320027
Alignment:
| Q |
100 |
aatatatctccttgtatcttctatgagtggagttggaacccgaacgagtgcttaaaaagatgatttgggtgcggtgtttggctcacccagtccatggaat |
199 |
Q |
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| T |
17319792 |
aatatatctccctgtatcttctatgagtggagttggaacccgaacgagtgcttaaaaagatgatttgggtgcggtgtttggctcacccagtccatggaat |
17319891 |
T |
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| Q |
200 |
ttagcttttgctagagggactaacttatcctttggtttggccttctg-tttgtttatgtcgggtgttttgaacataactgtgtttctgtggagttatatc |
298 |
Q |
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|||||||||||||| | ||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
17319892 |
ttagcttttgctagggagactaacttatcctttgttttggccttctgttttttttatgtcgggtgttctgaacgtaactgtgtttctgtggagttatatc |
17319991 |
T |
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| Q |
299 |
cctttattagcaggtttttgtgtgcttgtttctttt |
334 |
Q |
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| T |
17319992 |
cctttattagcaggtttttgtctgcttgtttctttt |
17320027 |
T |
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