View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0918_low_35 (Length: 338)

Name: NF0918_low_35
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0918_low_35
NF0918_low_35
[»] chr2 (12 HSPs)
chr2 (98-310)||(44614347-44614559)
chr2 (98-293)||(44623510-44623705)
chr2 (221-310)||(39601862-39601951)
chr2 (114-184)||(39422491-39422561)
chr2 (114-184)||(39136281-39136351)
chr2 (223-310)||(39214733-39214820)
chr2 (118-184)||(39458209-39458275)
chr2 (116-180)||(39129487-39129551)
chr2 (114-184)||(39151898-39151968)
chr2 (225-279)||(39160992-39161046)
chr2 (225-279)||(39208148-39208202)
chr2 (114-184)||(39488192-39488262)
[»] chr8 (2 HSPs)
chr8 (108-209)||(44951378-44951476)
chr8 (99-200)||(40347250-40347351)
[»] chr7 (1 HSPs)
chr7 (114-184)||(19806642-19806712)
[»] chr5 (1 HSPs)
chr5 (142-182)||(17058843-17058883)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 98 - 310
Target Start/End: Complemental strand, 44614559 - 44614347
Alignment:
Q  98 ccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactttttgtccattgca 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44614559 ccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaattgcctctcttctactttttgtccattgca 44614460  T
Q  198 ttcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaagga 297  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44614459 ttcctcaaatgatttttttaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctgaccttttatttatattcaacgaagga 44614360  T
Q  298 atatcatcttcat 310  Q
    |||||||||||||    
T  44614359 atatcatcttcat 44614347  T

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Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 293
Target Start/End: Complemental strand, 44623705 - 44623510
Alignment:
Q  98 ccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactttttgtccattgca 197  Q
    ||||||| | ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  44623705 ccttaacttgggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttctacttgttgtccgttgca 44623606  T
Q  198 ttcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacga 293  Q
    |||| | |||||       ||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||| |||||||||| ||||||||    
T  44623605 ttccgcgaatgatttttttaacgatgcaagttctttcctcagcatggaaaatgaattatcagctgattttcctggctttttatttatgttcaacga 44623510  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 39601951 - 39601862
Alignment:
Q  221 atgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcat 310  Q
    |||||||  ||||| ||||||||||||||||  |||||| |||||||| |||||||||| ||| || |||| ||||||||||||||||||    
T  39601951 atgcaaggcctttcttcagcgaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcat 39601862  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 39422491 - 39422561
Alignment:
Q  114 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 184  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||  | ||||||||||||    
T  39422491 cttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctactt 39422561  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 39136351 - 39136281
Alignment:
Q  114 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 184  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  39136351 cttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 39136281  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 39214820 - 39214733
Alignment:
Q  223 gcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcat 310  Q
    ||||| |||||| ||||||||||||||||  |||  | ||||||||||||||||||| ||| || | || || |||||||||||||||    
T  39214820 gcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcat 39214733  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 39458275 - 39458209
Alignment:
Q  118 ttttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 184  Q
    ||||| || ||||||||||| | |||||||||||||||||| ||| |||||| | ||||||||||||    
T  39458275 ttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctactt 39458209  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 39129551 - 39129487
Alignment:
Q  116 tattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 180  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||| |||||| | ||||||||    
T  39129551 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 39151968 - 39151898
Alignment:
Q  114 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 184  Q
    ||||||||| ||||||||| ||| || |||||||| ||||||||| ||| ||| || | ||||||||||||    
T  39151968 cttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctactt 39151898  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 39161046 - 39160992
Alignment:
Q  225 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 279  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39161046 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39160992  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 39208148 - 39208202
Alignment:
Q  225 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 279  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39208148 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39208202  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 39488192 - 39488262
Alignment:
Q  114 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 184  Q
    ||||||||| ||||||||  |||| | ||||| |||||||||||||||| ||| || || |||||||||||    
T  39488192 cttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctactt 39488262  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 44951378 - 44951476
Alignment:
Q  108 ggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactttttgtccattgcattcctcaaat 207  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||||||||||| | ||||||| |||||||||||||   ||| || |||||||||||||||    
T  44951378 ggtctccttattttcaagctcttcgcagcacttcttaatatctctctttatcggccgcaattgcctctcttctac---ttgcccgttgcattcctcaaat 44951474  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 40347351 - 40347250
Alignment:
Q  99 cttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactttttgtccattgcat 198  Q
    |||||| | ||||||| ||||||||||||||||||| || ||||||| | || |||| || ||||||||||||||| ||| ||||| ||||| |||||||    
T  40347351 cttaacttgggtctccatattttctagctctttgcaacacttctcaacagctttcttaatggaccgcaatcgcctcacttttacttgttgtctattgcat 40347252  T
Q  199 tc 200  Q
    ||    
T  40347251 tc 40347250  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 19806712 - 19806642
Alignment:
Q  114 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 184  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  19806712 cttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 19806642  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 17058883 - 17058843
Alignment:
Q  142 tcaatatctctctttatagaccgcaatcgcctctcttctac 182  Q
    ||||||||||||||||||||| |||||||| | ||||||||    
T  17058883 tcaatatctctctttatagactgcaatcgcttttcttctac 17058843  T

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