View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_36 (Length: 337)
Name: NF0918_low_36
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 33 - 288
Target Start/End: Complemental strand, 43626638 - 43626380
Alignment:
| Q |
33 |
gcaatgttgatgtgagtatagctaaaccaataattaaaaatagtaaattgaggggagtttgaaagattgttgattgtaatgaaattgaaaaggacgcgag |
132 |
Q |
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| T |
43626638 |
gcaatgttgatgtgagtatagctaaaccaataattaaaaatagtaaattgaggggagtttgaaagattgttaattgtaatgaaattgaaaaggacgcgag |
43626539 |
T |
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| Q |
133 |
acagagtttttacgatgattggggttcttcaaattccctttatgtctttgttggattagtgcatgttcctagacaaatattatttaagatttatacttac |
232 |
Q |
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| T |
43626538 |
atagagtttttacgatgattggggttcttcaaattccctttatgtctttgttggattagtgcatgttcctagacaaatattatttaagatttatacttac |
43626439 |
T |
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| Q |
233 |
gacgtc---taaagtaaggcctactttgtctccgattataggccccttcatgaaatatt |
288 |
Q |
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| T |
43626438 |
gacgtctaataaagtaaggcctactttttctccgattataggccccttcatgaaatatt |
43626380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 9497475 - 9497386
Alignment:
| Q |
168 |
ccctttatgtctttgttggattagtgcatgttcctaga-caaatattatttaagatttatacttacgacgtct---aaagtaaggcctac |
253 |
Q |
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| T |
9497475 |
ccctctatgtctttgttggattaacacatgttcctagatcaaatactacctaagatttatattcacgacgtctaacaaagtaaggcctac |
9497386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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