View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_41 (Length: 307)
Name: NF0918_low_41
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 297
Target Start/End: Complemental strand, 14392462 - 14392195
Alignment:
| Q |
30 |
aaaagatataaatttgatcctataattttagatttggccagactcaaaatttaaattactacctccgtccatgttgnnnnnnntatttggacaaaccgtg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14392462 |
aaaagatataaatttgatcctataattttagatttggccaaactcaaaatttaaattactacctccgtccatgttgaaaaatatatttggacaaaccgtg |
14392363 |
T |
|
| Q |
130 |
aaaaaattatttgcacattaagggtgtgatttggcaagtttgactcagcaatataaaaacatcatcttattaatctctaacccaaaaataaggggttata |
229 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14392362 |
aaaaaactatttgcacattaagggtgtgatttggcaagtttgactcaacaatataaaaacatcatcttattaatctctaacccaaaaataaggggttata |
14392263 |
T |
|
| Q |
230 |
aaacctcgtctcctccttgcataattcatcttcgtcctccatcttcttcttcatttattcacttcatc |
297 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14392262 |
aaacctcgtctcctccttgtataattcatcttcgtcctccatcttcttcttcatttattcacttcatc |
14392195 |
T |
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