View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0918_low_42 (Length: 305)
Name: NF0918_low_42
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 35790873 - 35791008
Alignment:
| Q |
95 |
tcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgcaaactatagcttttctctcttcatttgtatctatct |
194 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35790873 |
tcctagttagttttaatggtcaatttgaaattcaaatgtaaatctctgagtcataaatatgtgcaaactataacttttctctcttcatttgtatctatct |
35790972 |
T |
|
| Q |
195 |
atctatacctttgaattagaaaatttaatgaattga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35790973 |
atctatacctttgaattagaaaatttaatgaattga |
35791008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 35779103 - 35779233
Alignment:
| Q |
94 |
ctcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgcaaactatagcttttctctcttcatttgtatctatc |
193 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
35779103 |
ctcctagttagttttaatggtcaatttgaaattcaaatgtaaa--tctgagtcatagatatgtgcaaacta---cttttctctcttcatttgta-ctatc |
35779196 |
T |
|
| Q |
194 |
tatctatacctttgaattagaaaatttaatgaattga |
230 |
Q |
| |
|
||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
35779197 |
tatttataccttcgatttagaaaatttaatgaattga |
35779233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 35790702 - 35790775
Alignment:
| Q |
33 |
ataccattccaaggaaagatggattaacaaaagttcaaggtgttggagtaatacttaaaccctcctagttagtt |
106 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35790702 |
ataccattgcaaagaaagatggattaacaaaagttcaaggtgttggagtaatacttaaaccctcctagttagtt |
35790775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 49781953 - 49781890
Alignment:
| Q |
93 |
cctcctagttagttttaatggtcaatttaaaattcaaatgtaaatctctaagtcataaatatgtgc |
158 |
Q |
| |
|
|||||||||||||| | || ||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
49781953 |
cctcctagttagttatgttgatcaatttgaaattcaaatgtaaatctc--agtcataaataagtgc |
49781890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1408 times since January 2019
Visitors: 6712