View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_56 (Length: 251)
Name: NF0918_low_56
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 41043270 - 41043475
Alignment:
| Q |
30 |
tcaagttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaannnnnnnccctttgg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41043270 |
tcaagttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaatttttttccctttgg |
41043369 |
T |
|
| Q |
130 |
catttgctttttaatgttcttgtcaccaatctgaaaatcaaatccttcatgttcatcatcctcaatggaattcataattttagtaagattgctaggctcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043370 |
catttgctttttaatgttcttgtcaccaatctgaaaatcaaatccttcatgttcatcatcctcaatggaattcataattttagtaagattgctaggctcc |
41043469 |
T |
|
| Q |
230 |
ttatat |
235 |
Q |
| |
|
|||||| |
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|
| T |
41043470 |
ttatat |
41043475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 28087153 - 28087022
Alignment:
| Q |
30 |
tcaagttcttgttttgttcttgctgagctttctccttctcaatttgaccataagcataccttaaaatttggctatgagtgtttaannnnnnnccctttgg |
129 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || || || | ||| |||||||| |
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| T |
28087153 |
tcaagttattgtttttctcttgttgagctttctccttctcaatctgaccataagcatatcttaaaatttgactttgcgtatgtaaattttttccctttgg |
28087054 |
T |
|
| Q |
130 |
catttgctttttaatgttcttgtcaccaatct |
161 |
Q |
| |
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||||||||||||||| || ||||| ||||||| |
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|
| T |
28087053 |
catttgctttttaatatttttgtccccaatct |
28087022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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