View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0918_low_57 (Length: 250)
Name: NF0918_low_57
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_57 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 35632648 - 35632876
Alignment:
| Q |
12 |
cacagaattattttcattttcttaagactaaacaagcctgtgttttttcacaatacaaaaggaaaaaccaagaaaagaacaagtcatagatatggatata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35632648 |
cacagaattattttcattttcttaagactaaacaagcccgtgttttttcacaatacaaaaggaaaaaccaagaaaagaacaagtcatagatatggatata |
35632747 |
T |
|
| Q |
112 |
tacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaacttatcatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35632748 |
tacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaacttatcatt |
35632847 |
T |
|
| Q |
212 |
ctctgttaaaactctagtaaacatctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35632848 |
ctctgttaaaactctagtaaacatctctg |
35632876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 35629549 - 35629722
Alignment:
| Q |
69 |
aaaggaaaaaccaagaaaagaacaagtcatagatatggatatataca--tacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaa |
166 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || |||||||| | ||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
35629549 |
aaaggaaaaaccaagaaaagaaaaagtcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaa |
35629648 |
T |
|
| Q |
167 |
gaactcccaaagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctagtaaacatctctg |
240 |
Q |
| |
|
||| |||||||||||| |||| ||||||||||||||||| ||| | | |||||||||||||||| |||||||| |
|
|
| T |
35629649 |
gaaatcccaaagtccatcagaagcaaatataagaaacttgtcactatatgttaaaactctagtacgcatctctg |
35629722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 69 - 228
Target Start/End: Original strand, 35635967 - 35636126
Alignment:
| Q |
69 |
aaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaaga |
168 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| || |||||| ||||| |||||||| ||| ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
35635967 |
aaaggaaaaataaagaaaagaaaaagtcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaaga |
35636066 |
T |
|
| Q |
169 |
actcccaaagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctag |
228 |
Q |
| |
|
| |||||||||||| |||| |||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
35636067 |
aatcccaaagtccatcagaagcaaatatcagaaacttatcgttctctgttaaatctctag |
35636126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 10338560 - 10338441
Alignment:
| Q |
103 |
atggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
10338560 |
atggatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaa |
10338461 |
T |
|
| Q |
203 |
cttatcattctctgttaaaa |
222 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
10338460 |
cttattactctctgttaaaa |
10338441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10299340 - 10299123
Alignment:
| Q |
19 |
ttattttcattttcttaagactaaacaagcct--gtgttttttcacaatacaaaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacat |
116 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
10299340 |
ttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatat------atacat |
10299247 |
T |
|
| Q |
117 |
acatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaacttatcattctctg |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| | |||||||||||| |||||||||||| |||| |||||||||| |||||||||||| |||| |
|
|
| T |
10299246 |
acatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctg |
10299147 |
T |
|
| Q |
217 |
ttaaaactctagtaaacatctctg |
240 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
10299146 |
ttaaaactctagtatgcatctctg |
10299123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10319772 - 10319555
Alignment:
| Q |
19 |
ttattttcattttcttaagactaaacaagcct--gtgttttttcacaatacaaaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacat |
116 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
10319772 |
ttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatat------atacat |
10319679 |
T |
|
| Q |
117 |
acatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaacttatcattctctg |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| | |||||||||||| |||||||||||| |||| |||||||||| ||||| |||||| |||| |
|
|
| T |
10319678 |
acatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactgatcattatctg |
10319579 |
T |
|
| Q |
217 |
ttaaaactctagtaaacatctctg |
240 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
10319578 |
ttaaaactctagtatgcatctctg |
10319555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 10336888 - 10336671
Alignment:
| Q |
19 |
ttattttcattttcttaagactaaacaagcct--gtgttttttcacaatacaaaaggaaaaaccaagaaaagaacaagtcatagatatggatatatacat |
116 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| || |||||| ||| |||| || ||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
10336888 |
ttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatat------atacat |
10336795 |
T |
|
| Q |
117 |
acatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaacttatcattctctg |
216 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||| | |||||||||||| |||||||||||| |||| |||||||||| ||||| |||||| |||| |
|
|
| T |
10336794 |
acatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactgatcattatctg |
10336695 |
T |
|
| Q |
217 |
ttaaaactctagtaaacatctctg |
240 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
10336694 |
ttaaaactctagtatgcatctctg |
10336671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 975 times since January 2019
Visitors: 6707