View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0918_low_6 (Length: 627)
Name: NF0918_low_6
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_6 |
 | |
|
| [»] scaffold0356 (2 HSPs) |
| | |
|
| [»] scaffold0665 (1 HSPs) |
| | |
|
| [»] scaffold1821 (1 HSPs) |
| | |
|
| [»] scaffold0291 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 30 - 576
Target Start/End: Original strand, 15558118 - 15558664
Alignment:
| Q |
30 |
aaatgagcaagactccactgctgcagatgtagagccttacaactccaacacgcaacaaacaatatcacaaatgacgcagaggtaaatttatcgtttcagg |
129 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15558118 |
aaatgagcaagactccactgctgtagatgtagagcctttcaactccaacacgcagcaaacaatatcacaaatgacgcataggtaaatttatcgtttcagg |
15558217 |
T |
|
| Q |
130 |
tcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatga |
229 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||| ||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15558218 |
tcccacccatacatcaataagtacacagcagcaggaatatacataatggtcatgatttatgggccagaatccgtgagtatgaccaacgaatggctgatga |
15558317 |
T |
|
| Q |
230 |
aggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccctagcaaactcgtgcaaagggtggtcctcctcca |
329 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
15558318 |
aggcttcactcaagtttttacaaagtcgcagaagcaaaatcttaaaaagcaagtcattggcaagccctatcaaacccatgcaaagggtggtcctcctcca |
15558417 |
T |
|
| Q |
330 |
tcatccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgctttttcgtgaaggtaacagctgtgccgacaaaatgg |
429 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| |
|
|
| T |
15558418 |
tcttccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgctttttcgtgaaggtaacagctgtgcagtcaaattgg |
15558517 |
T |
|
| Q |
430 |
cgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaatta |
529 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15558518 |
cgaatatgggtcatgagattcaaggttctatatggttagaaactcttctagacaagttgcatatggatttctaccgcgacagaattgatcttcccaatta |
15558617 |
T |
|
| Q |
530 |
tagatttccgtagtcatttatttattttgcattgttttcttttctgt |
576 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15558618 |
tagatttccttagtcatttatttattttgcattgtttgcttttctgt |
15558664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 152 - 364
Target Start/End: Complemental strand, 23833232 - 23833017
Alignment:
| Q |
152 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
251 |
Q |
| |
|
||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || || || ||||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
23833232 |
acacatcagtaaaaacatacagaatggtctggatttatgggccagaattcgcgaatacgaccaacgaatggctgatgaaggcttcacgcaagtcctctca |
23833133 |
T |
|
| Q |
252 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgtt |
348 |
Q |
| |
|
||||| | |||||| || |||||| ||||||||||||||||| || || |||||||||||||| |||||||||||||| ||| ||||||| |||| |
|
|
| T |
23833132 |
aagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcattatcatactcgtgcaaagggaggtcctcctccatcttcccaatgattatgtt |
23833033 |
T |
|
| Q |
349 |
atattggaatgtccga |
364 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
23833032 |
attttggaatgtccga |
23833017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 394 - 552
Target Start/End: Original strand, 15827401 - 15827556
Alignment:
| Q |
394 |
tttttcgtgaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatat |
493 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||||||||||||| |||| |||||| |||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
15827401 |
tttttcgtgaaggtaac---tgtgaggacaaattggcgaatatgggtcataggattcaaggttgtatttggttagaaattcttccagccgagttacatat |
15827497 |
T |
|
| Q |
494 |
ggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttattt |
552 |
Q |
| |
|
|||||| |||||||| ||||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
15827498 |
ggatttctaccgcgatagaattggtcttcttaattatagatttccttagtcatttattt |
15827556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 152 - 364
Target Start/End: Original strand, 22955160 - 22955375
Alignment:
| Q |
152 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
251 |
Q |
| |
|
||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || || || |||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
22955160 |
acacatcagtaaaaacatacagaatggtctggatttatgggccagaattcgcgaatacgaccaacgaatggctgatgaaggcttcatgcaagtcctctca |
22955259 |
T |
|
| Q |
252 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgtt |
348 |
Q |
| |
|
||||| | |||||| || |||||| ||||||||||||||||| || || |||||||||||||| |||||||||||||| ||| ||||||| |||| |
|
|
| T |
22955260 |
aagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgtattatcatactcgtgcaaagggaggtcctcctccatcttcccaatgattatgtt |
22955359 |
T |
|
| Q |
349 |
atattggaatgtccga |
364 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
22955360 |
attttggaatgtccga |
22955375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 30491956 - 30491990
Alignment:
| Q |
183 |
gatttatgggctagaatccgtgagtatgaccaacg |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30491956 |
gatttatgggctagaattcgtgagtatgaccaacg |
30491990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 122 - 363
Target Start/End: Complemental strand, 8447323 - 8447085
Alignment:
| Q |
122 |
gtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatg |
221 |
Q |
| |
|
||||||||||||||||||||| ||| | || |||| ||| ||||||||||| ||| |||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
8447323 |
gtttcaggtcccacccgtacagcaacatgttcacagcagcaggaacatacagaatggtcttgatttatgggccagaatccgtgaatatgatcaacgaatg |
8447224 |
T |
|
| Q |
222 |
gctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccctagcaaactcgtgcaaagggtggtc |
321 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
8447223 |
gctgacgaaggcttcactcaagttcttacaaaggcgcagaagcaaaatcgtaaaatgcaagtcattggcaagacctatcaaacccgtgcaaagggtggtc |
8447124 |
T |
|
| Q |
322 |
ctcctccatcatccaaatgattctgttatattggaatgtccg |
363 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
8447123 |
---ctccatcttccaaataattctgttatattggaatgtccg |
8447085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 396 - 558
Target Start/End: Complemental strand, 26421382 - 26421220
Alignment:
| Q |
396 |
tttcgtgaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatgg |
495 |
Q |
| |
|
|||||||||||||||| |||||| | || ||| ||||||||||||||||||| |||||| |||||||||||| || |||| ||| ||||||||||||| |
|
|
| T |
26421382 |
tttcgtgaaggtaacaactgtgcgaataatttggtgaatatgggtcatgagatttaaggttttatttggttagacacgcttcaagctgagttgcatatgg |
26421283 |
T |
|
| Q |
496 |
atttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttatttattttg |
558 |
Q |
| |
|
|||| | || || ||||||| ||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
26421282 |
atttctttcgagatagaattggtctacccaattatagatttccttagtcttttatttattttg |
26421220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 404 - 499
Target Start/End: Complemental strand, 8447071 - 8446976
Alignment:
| Q |
404 |
aggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggattt |
499 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
8447071 |
aggtatcagctgtgcggacaaattggcgaatatgggtcattggattcaaggttctattaggttagaaactcttccgacaaagttgcatatggattt |
8446976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 8e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 73 - 396
Target Start/End: Original strand, 24026900 - 24027224
Alignment:
| Q |
73 |
tccaacacgcaacaaacaatatcacaaatgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacataca |
172 |
Q |
| |
|
||||||||||||||||||||| ||| |||| | ||||| ||||||||| ||||||| || | || || | | |||||||||||| ||||||||||| |
|
|
| T |
24026900 |
tccaacacgcaacaaacaataacactgatgatgtagaggcaaatttatcacttcaggttccgtctgttcagccagaagtacacaacatcaggaacataca |
24026999 |
T |
|
| Q |
173 |
aaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatctt |
272 |
Q |
| |
|
|||| ||||||||||||||| || || | || |||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||| |||| |||| |
|
|
| T |
24027000 |
aaatgatcttgatttatgggccagtatacacgaatatgaccaactaatggctgatgaaggcttcactcaagtgctttcaaagtcgcagaaccaaagtctt |
24027099 |
T |
|
| Q |
273 |
aaaaagcaagtcattggc-aagccctagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccgaagtattg |
371 |
Q |
| |
|
||||| |||||||||||| ||||| || |||| |||| |||||||||| ||||||||| ||| ||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
24027100 |
aaaaatcaagtcattggcaaagccttattaaacccgtgtgaagggtggtcatcctccatcttcccaatgattatgttatattgaaatgtccgaggtattg |
24027199 |
T |
|
| Q |
372 |
gtaatgtcgataccaaaattgcttt |
396 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
24027200 |
gcaatgtcgataccaaaattgcttt |
24027224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 474 - 566
Target Start/End: Complemental strand, 24528041 - 24527950
Alignment:
| Q |
474 |
cttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttatttattttgcattgttt |
566 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| || |||||||||||||||||||||||| |
|
|
| T |
24528041 |
cttccagccgagttgcatatggatttttaccg-gacataattgatcttccctttgatagatttccttactcatttatttattttgcattgttt |
24527950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 146 - 396
Target Start/End: Original strand, 9235 - 9485
Alignment:
| Q |
146 |
ataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagtt |
245 |
Q |
| |
|
||||||||||| ||| || ||| |||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9235 |
ataagtacacagcagcagaaacgtacagaatgatcttgatttatgggccagaatacgtgaatatgaccaacgaatggctgatgaaggcttcactcaagtc |
9334 |
T |
|
| Q |
246 |
cttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccctagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattct |
345 |
Q |
| |
|
||| |||| ||| |||| || ||||||||||||||||| || ||||||| || || || || |||||||| ||| ||| ||||| ||| ||||||| | |
|
|
| T |
9335 |
ctttcaaaatcgcagaaacataatcttaaaaagcaagttgttagcaagccttatcagacccgagcaaagggcggtaatccaccatcttcccaatgattat |
9434 |
T |
|
| Q |
346 |
gttatattggaatgtccgaagtattggtaatgtcgataccaaaattgcttt |
396 |
Q |
| |
|
|| ||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
9435 |
tttgtattggactgtccgaggtattgacaatgtcgataccaaaattgcttt |
9485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 402 - 516
Target Start/End: Original strand, 13475 - 13589
Alignment:
| Q |
402 |
gaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggattttt |
501 |
Q |
| |
|
||||||||||| ||||| ||||| | |||||||||||||||| |||| |||||||||||||||||||||| |||| | | ||| ||||| ||||||| | |
|
|
| T |
13475 |
gaaggtaacagatgtgcggacaatttagcgaatatgggtcatgggattcaaggttctatttggttagaaacgcttccaactgagctgcatttggatttct |
13574 |
T |
|
| Q |
502 |
accgcgacagaattg |
516 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
13575 |
atcgcgacagaattg |
13589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 146 - 396
Target Start/End: Original strand, 6614 - 6865
Alignment:
| Q |
146 |
ataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagtt |
245 |
Q |
| |
|
||||||||||| ||| || ||| |||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6614 |
ataagtacacagcagcagaaacgtacagaatgatcttgatttatgggccagaatacgtgaatatgaccaacgaatggctgatgaaggcttcactcaagtc |
6713 |
T |
|
| Q |
246 |
cttacaaagtcgtagaagcaaaatctt-aaaaagcaagtcattggcaagccctagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattc |
344 |
Q |
| |
|
||| |||| ||| |||| || |||||| ||||||||||| || ||||||| || || || || |||||||| ||| ||| ||||| ||| ||||||| |
|
|
| T |
6714 |
ctttcaaaatcgcagaaacataatcttaaaaaagcaagttgttagcaagccttatcagacccgagcaaagggcggtaatccaccatcttcccaatgatta |
6813 |
T |
|
| Q |
345 |
tgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgcttt |
396 |
Q |
| |
|
| || ||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
6814 |
ttttgtattggactgtccgaggtattgacaatgtcgataccaaaattgcttt |
6865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 100 - 364
Target Start/End: Original strand, 27187318 - 27187585
Alignment:
| Q |
100 |
atgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaat |
199 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| | || || | ||| ||||| ||||| |||||||| ||| |||| ||||||||||| ||||| |
|
|
| T |
27187318 |
atgacgcagaggtaaatatatcgtctcaggtcccatctgttcagcctgaagcacacatcagtaaaaacatacagaatggtctggatttatgggccagaat |
27187417 |
T |
|
| Q |
200 |
ccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---c |
296 |
Q |
| |
|
|| || || ||||||||||||||||||||||||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| |
|
|
| T |
27187418 |
tcgcgaatacgaccaacgaatggctgatgaaggcttcacgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcat |
27187517 |
T |
|
| Q |
297 |
tagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccga |
364 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
27187518 |
tatcagactcgtgcaaagggaggtcctcctccatcttcccaatgattatgttattttggaatgtccga |
27187585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 103 - 364
Target Start/End: Original strand, 27176954 - 27177218
Alignment:
| Q |
103 |
acgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccg |
202 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| || || | ||| ||||| ||||| |||||||| ||| |||| ||||||||||| ||||| || |
|
|
| T |
27176954 |
acgcagaggtaaatatatcgtctcaggtcccatatgttcagcctgaagcacacatcagtaaaaacatacataatggtctggatttatgggccagaattcg |
27177053 |
T |
|
| Q |
203 |
tgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---ctag |
299 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| || |
|
|
| T |
27177054 |
cgaatacgaccaacgaatggctgatgaaggcttcatgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgtattat |
27177153 |
T |
|
| Q |
300 |
caaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtccga |
364 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
27177154 |
cagactcgtgcaaagggaggtcctcctccatcttcccaatgattatgttattttggaatgtccga |
27177218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 554
Target Start/End: Complemental strand, 8681604 - 8681510
Alignment:
| Q |
460 |
tttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttatttat |
554 |
Q |
| |
|
|||||||||| || |||| ||| ||||||||||||||||| || || ||||||| || | ||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
8681604 |
tttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtcgtttttttat |
8681510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 8681684 - 8681627
Alignment:
| Q |
301 |
aaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaat |
358 |
Q |
| |
|
|||| |||||||||||||||| ||||||| | || ||||| |||||||||||||||| |
|
|
| T |
8681684 |
aaacccgtgcaaagggtggtcatcctccaactgcccaatgaatctgttatattggaat |
8681627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 100 - 361
Target Start/End: Complemental strand, 16914288 - 16914024
Alignment:
| Q |
100 |
atgacgcagaggtaaatttatcgtttcaggtcccacccgtacatcaataagtacacaacagtaggaacatacaaaatagtcttgatttatgggctagaat |
199 |
Q |
| |
|
|||||| |||||||||| || ||| |||||||||| | || |||| ||| ||||| ||||| |||||||| ||| ||| ||||||| | ||||| |
|
|
| T |
16914288 |
atgacgtagaggtaaatataccgtctcaggtcccatctgttcatcctgaagcacacatcagtaaaaacatacagaatgctctggatttattttccagaat |
16914189 |
T |
|
| Q |
200 |
ccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagcc---c |
296 |
Q |
| |
|
|| || || ||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| || |||||| ||||||||||||||||| |
|
|
| T |
16914188 |
tcgcgaatacgaccaacgaatggttgatgaaggcttcacgcaagttctctcaaagtcgcagaagcaatctcgtaaaaatcaagtcattggcaagccgcat |
16914089 |
T |
|
| Q |
297 |
tagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgattctgttatattggaatgtc |
361 |
Q |
| |
|
|| || || |||||||| || |||||||||||||| ||| ||||||| |||||| |||||||||| |
|
|
| T |
16914088 |
tatcagacccgtgcaaacggaggtcctcctccatcttcccaatgattatgttattttggaatgtc |
16914024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 536
Target Start/End: Complemental strand, 44453341 - 44453265
Alignment:
| Q |
460 |
tttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagattt |
536 |
Q |
| |
|
|||||||||| | |||| ||| ||||||||||||||||| | || |||||||||| ||||||||||||||||| |
|
|
| T |
44453341 |
tttggttagacaggcttccagcggagttgcatatggatttctttcgagacagaattggctttcccaattatagattt |
44453265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 343
Target Start/End: Complemental strand, 25248370 - 25248176
Alignment:
| Q |
152 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
251 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||||||||||||||| | || || ||||||||||||||||| ||||||||||| ||||| || | |
|
|
| T |
25248370 |
acacatcagtaaaaacatacaggatggtctagatttatgggctagaatttgcgaatacgaccaacgaatggctgacgaaggcttcacgcaagtcctctta |
25248271 |
T |
|
| Q |
252 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaa---gccctagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgatt |
343 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||| || || ||||| |||| |||||||||| |||||||||| ||| ||||||| |
|
|
| T |
25248270 |
aagtcacagaagcaagctcgtaaaaagcaagtcattggcaaattgcattatcaaacccgtgaaaagggtggtactcctccatcttcccaatgatt |
25248176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 343
Target Start/End: Complemental strand, 25312154 - 25311960
Alignment:
| Q |
152 |
acacaacagtaggaacatacaaaatagtcttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttaca |
251 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||||||||||||||| | || || ||||||||||||||||| ||||||||||| ||||| || | |
|
|
| T |
25312154 |
acacatcagtaaaaacatacaggatggtctagatttatgggctagaatttgcgaatacgaccaacgaatggctgacgaaggcttcacgcaagtcctctta |
25312055 |
T |
|
| Q |
252 |
aagtcgtagaagcaaaatcttaaaaagcaagtcattggcaa---gccctagcaaactcgtgcaaagggtggtcctcctccatcatccaaatgatt |
343 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||| || || ||||| |||| |||||||||| |||||||||| ||| ||||||| |
|
|
| T |
25312054 |
aagtcacagaagcaagctcgtaaaaagcaagtcattggcaaattgcattatcaaacccgtgaaaagggtggtactcctccatcttcccaatgatt |
25311960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 24058942 - 24059010
Alignment:
| Q |
325 |
ctccatcatccaaatgattctgttatattggaatgtccgaagtattggtaatgtcgataccaaaattgc |
393 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
24058942 |
ctccatcttcccaatgattcttttatattggaatgttcgaggtattggcaatgtcgataccaaaattgc |
24059010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 320
Target Start/End: Original strand, 24056783 - 24056922
Alignment:
| Q |
181 |
ttgatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagca |
280 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||| ||| ||||| | ||||||||| || | || ||| || |||| || ||||||||||| |
|
|
| T |
24056783 |
ttgacttatgggccagaatccgtgaatatgaccagaaaatggatgaggaaggttacactcaagtcctatccaaatcgcagcagcagaagcttaaaaagca |
24056882 |
T |
|
| Q |
281 |
agtcattggcaagccctagcaaactcgtgcaaagggtggt |
320 |
Q |
| |
|
||| ||||||||||| || || || ||||||||||||||| |
|
|
| T |
24056883 |
agttattggcaagccttatcagacccgtgcaaagggtggt |
24056922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 552
Target Start/End: Complemental strand, 25247894 - 25247793
Alignment:
| Q |
451 |
aaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttat |
550 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||||||||||||| || || | | ||||| ||| ||| ||||| ||||||| ||||| ||||| |
|
|
| T |
25247894 |
aaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgagtctaaattgctctaccctattattgatttccttagtcgtttat |
25247795 |
T |
|
| Q |
551 |
tt |
552 |
Q |
| |
|
|| |
|
|
| T |
25247794 |
tt |
25247793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 552
Target Start/End: Complemental strand, 25311678 - 25311577
Alignment:
| Q |
451 |
aaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattgatcttcccaattatagatttccgtagtcatttat |
550 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||||||||||||| || || | | ||||| ||| ||| ||||| ||||||| ||||| ||||| |
|
|
| T |
25311678 |
aaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgagtctaaattgctctaccctattattgatttccttagtcgtttat |
25311579 |
T |
|
| Q |
551 |
tt |
552 |
Q |
| |
|
|| |
|
|
| T |
25311578 |
tt |
25311577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1821 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1821
Description:
Target: scaffold1821; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 231 - 364
Target Start/End: Original strand, 509 - 645
Alignment:
| Q |
231 |
ggcttcactcaagttcttacaaagtcgtagaagcaaaatcttaaaaagcaagtcattggcaagccc---tagcaaactcgtgcaaagggtggtcctcctc |
327 |
Q |
| |
|
|||||||| ||||| || ||||||| | |||||| || |||||| ||||||||||||||||| || || ||||||||| || | |||||||||| |
|
|
| T |
509 |
ggcttcacgcaagtcctctcaaagtcacaaaagcaagctcgtaaaaatcaagtcattggcaagccgcattatcagactcgtgcacagagaggtcctcctc |
608 |
T |
|
| Q |
328 |
catcatccaaatgattctgttatattggaatgtccga |
364 |
Q |
| |
|
|||| ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
609 |
catcttcccaatgattatgttattttggaatgtccga |
645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 516
Target Start/End: Complemental strand, 24361079 - 24361002
Alignment:
| Q |
439 |
gtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatatggatttttaccgcgacagaattg |
516 |
Q |
| |
|
||||||||||| |||||| |||||||||||| || |||||||| ||||| ||||||||||| | || |||||||||| |
|
|
| T |
24361079 |
gtcatgagattcaaggttatatttggttagacacgcttctagctgagttacatatggatttctttcgagacagaattg |
24361002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 17150909 - 17150945
Alignment:
| Q |
183 |
gatttatgggctagaatccgtgagtatgaccaacgaa |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
17150909 |
gatttatgggctagaattcgtgagtatgacaaacgaa |
17150945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 542
Target Start/End: Original strand, 11842505 - 11842653
Alignment:
| Q |
394 |
tttttcgtgaaggtaacagctgtgccgacaaaatggcgaatatgggtcatgagattgaaggttctatttggttagaaactcttctagccgagttgcatat |
493 |
Q |
| |
|
|||| ||||||||||| |||||||| || ||| |||| ||||||||| |||| ||| | |||||| |||||||||| | |||| | ||||||||| | |
|
|
| T |
11842505 |
ttttccgtgaaggtaatagctgtgcagataaattggcaaatatgggttatgatattcagggttctgtttggttagacatgcttcctgtagagttgcattt |
11842604 |
T |
|
| Q |
494 |
ggatttttaccgcgacagaattgatcttcccaattatagatttccgtag |
542 |
Q |
| |
|
|| || || || |||||||||| | ||||||||||||||||||||| |
|
|
| T |
11842605 |
cgacttctatcgagacagaattggcttacccaattatagatttccgtag |
11842653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 16013 - 15948
Alignment:
| Q |
183 |
gatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttctt |
248 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| | || || ||||| ||||||||||||||| |
|
|
| T |
16013 |
gatttatgggctagaattcgtgaatatgacaaacggaccgcggaggaaggattcactcaagttctt |
15948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 99237 - 99302
Alignment:
| Q |
183 |
gatttatgggctagaatccgtgagtatgaccaacgaatggctgatgaaggcttcactcaagttctt |
248 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| | || || ||||| ||||||||||||||| |
|
|
| T |
99237 |
gatttatgggctagaattcgtgaatatgacaaacggaccgcggaggaaggattcactcaagttctt |
99302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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