View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0918_low_9 (Length: 546)
Name: NF0918_low_9
Description: NF0918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0918_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 14 - 517
Target Start/End: Original strand, 30699783 - 30700292
Alignment:
| Q |
14 |
ctgttgcaagcttttacatagagttagacaaacttatatgtgttaagagaacagctacgtgagtgatgagagatcatgcactgaagaaagaagttgacat |
113 |
Q |
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| T |
30699783 |
ctgttgcaaacttttacatagagttagacaaacttatatgtgtta-gagaacagctacgtgagtgatgagagatcatgcactgaagaaagaagttgacat |
30699881 |
T |
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| Q |
114 |
gtttcagtggagaatgggaggtgtgtgcataaatttaagtgaatgaggggaggtatgtgcgggttataaatgaataaaaagggaaataaggtaaaagaca |
213 |
Q |
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| T |
30699882 |
gtttcagtggagaatgggaggtgtgtgcataaatttaagtgaatgaggggaggtatgtgcgggttataaatgaataaaaagggaaataaggtaaaagaca |
30699981 |
T |
|
| Q |
214 |
agaggaggagctttag-------gtatatcagagattttcatctatacctataattttaaaatcaaattttcacaaataaaccttcttcataacaaaata |
306 |
Q |
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| T |
30699982 |
agaggaggagctatagcctataggtatatcagagattttcatctatacctataattttaaaatcaaattttcacaaataaaccttcttcataacaaaata |
30700081 |
T |
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| Q |
307 |
aattagaaaagtggacgacactcgtcttaaagctagttttagataagagttgagagtatctcctattaatctagaagtgcaatgcaacacatttccttgc |
406 |
Q |
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| T |
30700082 |
aattagaaaagtggacgacactcttcttaaagctagttttagataagagttgagagtatctcctattaatctagaagtgcaatgcaacacattttcttgc |
30700181 |
T |
|
| Q |
407 |
tggttgctcaaacaaaaactaacttcaacgcatccatcccacttctttaaggatagctgcatcaagattacacttgacatatccatccatgcgacggtgc |
506 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30700182 |
tggttgctcaaacaaaaaccaatttcaacgcatccatcccacttctttaaggatagctgcatcaagattacacttgacatatccatccatgcgacggtgc |
30700281 |
T |
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| Q |
507 |
agtccattgac |
517 |
Q |
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| T |
30700282 |
agtccattgac |
30700292 |
T |
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