View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_high_1 (Length: 759)
Name: NF0919_high_1
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 11 - 730
Target Start/End: Original strand, 44622353 - 44623083
Alignment:
| Q |
11 |
ataatatcctgtgagattggacataaaatacaactgatatcaaacagcaaaaatgacaatcttaggttcatcacgagctaaaggaatagcgggataaaaa |
110 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44622353 |
ataatatcctgtgagattggacataaaatgcaactgatatcaaacagcaaaaatgacaatcttaggttcatcacgagctaaaggaatagcggtataaaaa |
44622452 |
T |
|
| Q |
111 |
agcagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtactagat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
44622453 |
agcagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgctatagctgctgtttggtaacagtttgtactagat |
44622552 |
T |
|
| Q |
211 |
catattacgcataaataatagcaattttttaatatttcaatacactatagcactatagcgccactatttgacaacactgtnnnnnnntacagttcaaatg |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44622553 |
catattacgcataaataatagcaattttttaatatttcaatacactaaagcactatagcgccactatttgacaacactgtaaaaaa-tacagttcaaatg |
44622651 |
T |
|
| Q |
311 |
tagagtatgtaaaagctaaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctggacctccaaggttt |
410 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44622652 |
tagagtatgtaaaagcta------gagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctggacctccaaggttt |
44622745 |
T |
|
| Q |
411 |
agcaataacactccaatcttatcatc------------------agaaacatcctgatctgttcgagctactaaagctccaactgaaaacatgcgctttt |
492 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44622746 |
agcaataacactccaatcttatcatcagatgtaagagttgcatcagaaacatcctgatctgttcgagctactaaagctcccactgaaaacatgcgctttt |
44622845 |
T |
|
| Q |
493 |
tgagtgattgtttggaaaccaggggttttgcttcagatcgcagtgaagaaaaactagctgctatgtaatttttcacaggattagagttaacagaagcctc |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44622846 |
tgagtgattgtttggaaaccaggggttttgcttcagatcgcagtgaagaaaaactagctgctatgtaatttttcacaggattagagttaacagaagcctc |
44622945 |
T |
|
| Q |
593 |
cacataagctccagagcataaggacnnnnnnngagaggtacagattgcctgtggcgacagcctgcaaaagtaagtataatataagcttcgaaagttttta |
692 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44622946 |
cacatgagctccagagcataaggactttttttgagaggtacagattgcctgtggcgacagcctgcaaaagtaagtataatataagcttagaaagttttta |
44623045 |
T |
|
| Q |
693 |
ctatccttgataattagtgataaaatgtggcataaaaa |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
44623046 |
ctatccttgataattagtgataaaatgtggcataaaaa |
44623083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 329 - 437
Target Start/End: Original strand, 39877943 - 39878051
Alignment:
| Q |
329 |
aagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctggacctccaaggtttagcaataacactccaatc |
428 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
39877943 |
aagctagagtattactggatcggcaaaaaggttaaataaaaaaggctgcacatcatctagagtctctggacctccaaggtttaacaataacactccgatc |
39878042 |
T |
|
| Q |
429 |
ttatcatca |
437 |
Q |
| |
|
|| |||||| |
|
|
| T |
39878043 |
ttgtcatca |
39878051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 299 - 405
Target Start/End: Original strand, 24035976 - 24036076
Alignment:
| Q |
299 |
acagttcaaatgtagagtatgtaaaagctaaagctagagtattaccgggtctgcaaaaaggttaaataaaaaaggttgcacatcttctagagtctctgga |
398 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||||| |||||| |||| || |||||||||||||||||||||| |
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|
| T |
24035976 |
acagttcaaatgtagaatatgt------taatgctagagtattaccaggtcagcaaaaagggtaaatagaaaatatttcacatcttctagagtctctgga |
24036069 |
T |
|
| Q |
399 |
cctccaa |
405 |
Q |
| |
|
||||||| |
|
|
| T |
24036070 |
cctccaa |
24036076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 34925253 - 34925343
Alignment:
| Q |
117 |
gttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagctgctgtttggcaacagtttgtacta |
207 |
Q |
| |
|
||||||||| ||| || || ||||||| || ||||||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||||| |
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| T |
34925253 |
gttgtcaattgcagatcgtggaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctatttgacaacattttgtacta |
34925343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 8558804 - 8558849
Alignment:
| Q |
138 |
aaaatagaagcttgttcaaattctgctatgctacaatgatatagct |
183 |
Q |
| |
|
||||||| || |||||||||||| |||||||||||||| ||||||| |
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|
| T |
8558804 |
aaaatagtagtttgttcaaattccgctatgctacaatgttatagct |
8558849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 38434252 - 38434183
Alignment:
| Q |
113 |
cagtgttgtcaatcgcatattatgtaaaatagaagcttgttcaaattctgctatgctacaatgatatagc |
182 |
Q |
| |
|
||||||||||||||||| | | | ||||||| || ||||||||||||||||||| |||| || |||||| |
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|
| T |
38434252 |
cagtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagc |
38434183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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