View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_high_14 (Length: 251)
Name: NF0919_high_14
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25217470 - 25217231
Alignment:
| Q |
1 |
ttcctcaaaacttactcgaccatcctataacaaaacaaaacattataaccgatttctaactaatataaccgatttataaccgacttctaacatctatctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
25217470 |
ttcctcaaaacttactcgaccatcctataacaaaacaaaacattataaccgatttctaactaatataac-gatttataaccgacttctaacatatatctt |
25217372 |
T |
|
| Q |
101 |
accttatccaagtcgacatcgttgagaatgtctctgatcacttggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactcaacat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25217371 |
accttatccaagtcgacatcgttgagaatgtctctgatcacttggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactcaacat |
25217272 |
T |
|
| Q |
201 |
atccactcttattcttgtcaaagaaattgaatgcttctgtg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25217271 |
atccactcttattcttgtcaaagaaattgaatgcttctgtg |
25217231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 1969782 - 1969926
Alignment:
| Q |
97 |
tcttaccttatccaagtcgacatcgttgagaatgtctctgatcacttggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactca |
196 |
Q |
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|
|||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||| |
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| T |
1969782 |
tcttaccttatccaagtctacatagttgagaatgtctcttatcacttggtcatcggtcgaaccatcatctgatagggaatctttcaattcatcaaactca |
1969881 |
T |
|
| Q |
197 |
acatatccactcttattcttgtcaaagaaattgaatgcttctgtg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1969882 |
acatatccactcttattcttgtcaaagaaattgaatgcttctgtg |
1969926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1969659 - 1969696
Alignment:
| Q |
1 |
ttcctcaaaacttactcgaccatcctataacaaaacaa |
38 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |
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|
| T |
1969659 |
ttcctcaaaacttactcgaccattctttaacaaaacaa |
1969696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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