View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_high_15 (Length: 251)
Name: NF0919_high_15
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 35153361 - 35153578
Alignment:
| Q |
13 |
aatatccccaacatttgcactttacctatatagcttgccaaggcattcgttaaaagtctcaacaaactcaatctacatttacttcacattttccttaatc |
112 |
Q |
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| T |
35153361 |
aatatccccaacatttgcactttacctatatagcttgccaaggcattcgttaaaagtctcaacaaactcaatctacatttacttcacattttccttaatc |
35153460 |
T |
|
| Q |
113 |
taataatgttgattggaatcgagatgatattttccagcaatcacaaatgtgttgttcaattgcattcaagttgtcttgaactaattgccaggttcattac |
212 |
Q |
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| T |
35153461 |
taataatgttgattggaatcgagatgatattttccagcaatcacaaatgtgttgttcaattgcattcaagttgtcttgaactaattgccaggttcattac |
35153560 |
T |
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| Q |
213 |
aacaacatttaactaaac |
230 |
Q |
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|||||||||||||||||| |
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| T |
35153561 |
aacaacatttaactaaac |
35153578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 41158853 - 41158770
Alignment:
| Q |
39 |
tatatagcttgccaaggcattcgttaaaagtctcaacaaactcaatctacatttacttcacattttccttaatctaataatgtt |
122 |
Q |
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| T |
41158853 |
tatatagcttgccatggcattcattaaaagcctctacaaactcaatctaccttcacttcacatttttcttaacctgataatgtt |
41158770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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