View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_high_4 (Length: 499)
Name: NF0919_high_4
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 73 - 316
Target Start/End: Complemental strand, 29880350 - 29880107
Alignment:
| Q |
73 |
cctcctcaatcacaagtattgaacaatgtgaatattcaattgcagtcaataattcaatcccaaccacaacattatcctatgaatgggggtaaccaacacg |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
29880350 |
cctcctcaatcacaagtattgaacaatgtgaatattcaattgcactcaataattcaatcccaaccgcaacattatcctatgaatgggagtaaccaacacg |
29880251 |
T |
|
| Q |
173 |
tgaacggtttcccttcgttagcgtctttcaatgctaacaatccaactttgccggtgaatgctagtaaccaacttatgaatgatttcccttcttcacagaa |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29880250 |
tgaacggtttcccttcgttagcgtctttcaatgctaacaatccaactttgccggtgaatgctagtaaccaacttatgaatgatttcccttcttcacagaa |
29880151 |
T |
|
| Q |
273 |
aatggccctctgtcaccaacttctgaattcatattgtcttcacc |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29880150 |
aatggccctctgtcaccaacttctgaattcatattgtcttcacc |
29880107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 162 - 486
Target Start/End: Original strand, 29883539 - 29883864
Alignment:
| Q |
162 |
taaccaacacgtgaacggtttcccttcgttagcgtctttcaatgctaacaatccaactttgccggtgaatgctagtaaccaacttatgaatgatttccct |
261 |
Q |
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||||||||| ||||||||||| ||||||| || ||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29883539 |
taaccaacatgtgaacggttttccttcgtgagtgtcttccaatgctaccaatccaactttaccggtgaatgctagtaaccaacttatgaatgatttccct |
29883638 |
T |
|
| Q |
262 |
tcttcacaga-aaatggccctctgtcaccaacttctgaattcatattgtcttcacccacaagtaacatcaatttgctatcccctcagtctttggataata |
360 |
Q |
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| T |
29883639 |
tcttcacaaacaaatgaccctcaatcaccaacgtatgaatttctattgtcttcccccacaagtaacatgtatttgctaccccctcggtcttcggataata |
29883738 |
T |
|
| Q |
361 |
ctttactgtcaccaagcattttttcttcatctccatctcttgaataccctttctatccacatctaccaaacatgatttcaagctctggtcctccgtctcc |
460 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
29883739 |
ctttactctcaccaagcattttttcttcacctccatctcttgaataccatttctatccacatctacaaaatgggatttcatgctctggtcctccgtctcc |
29883838 |
T |
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| Q |
461 |
actttctgcagccatttttccttcct |
486 |
Q |
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||||||||||| | |||||||||||| |
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| T |
29883839 |
actttctgcaggcttttttccttcct |
29883864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 369 - 486
Target Start/End: Complemental strand, 29880111 - 29879994
Alignment:
| Q |
369 |
tcaccaagcattttttcttcatctccatctcttgaataccctttctatccacatctaccaaacatgatttcaagctctggtcctccgtctccactttctg |
468 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29880111 |
tcaccaagcattttttcttcatttccatctcttgaataccctttctatccacatctaccaaacatgatttcaagctctggtcctccgtctccactttctg |
29880012 |
T |
|
| Q |
469 |
cagccatttttccttcct |
486 |
Q |
| |
|
||| |||||||||||||| |
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| T |
29880011 |
caggcatttttccttcct |
29879994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 29883409 - 29883490
Alignment:
| Q |
77 |
ctcaatcacaagtattgaacaatgtgaatattcaattgcagtcaataattcaatcccaaccacaacattatcctatgaatgg |
158 |
Q |
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|
||||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||||| |||||||||||||||| |
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| T |
29883409 |
ctcaatcacaagtattgaacaatgtgaatgttcaatctcaattaataattcaatcccaaccacaatattatcctatgaatgg |
29883490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 17676195 - 17676088
Alignment:
| Q |
234 |
tagtaaccaacttatgaatgatttcccttcttcacagaa-aatggccctctgtcaccaacttctgaattcatattgtcttcacccacaagtaacatcaat |
332 |
Q |
| |
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||||||||||||| |||||| ||||| ||| ||||| | |||||||||| || |||||||||||||| ||||||||||||| | |||||||| ||| |
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| T |
17676195 |
tagtaaccaacttgtgaatggtttcctttcctcacaaaccaatggccctcgatctccaacttctgaatttttattgtcttcaccgaatagtaacatgaat |
17676096 |
T |
|
| Q |
333 |
ttgctatc |
340 |
Q |
| |
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|||||||| |
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|
| T |
17676095 |
ttgctatc |
17676088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 17650156 - 17650262
Alignment:
| Q |
235 |
agtaaccaacttatgaatgatttcccttcttcacaga-aaatggccctctgtcaccaacttctgaattcatattgtcttcacccacaagtaacatcaatt |
333 |
Q |
| |
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|||||||||||| |||||| |||| ||| ||||| | |||||||||| ||||||||||||||||| ||||||||||||| | |||||||| |||| |
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| T |
17650156 |
agtaaccaacttgtgaatgggttcctttcctcacaaacaaatggccctagatcaccaacttctgaatttttattgtcttcaccgaatagtaacatgaatt |
17650255 |
T |
|
| Q |
334 |
tgctatc |
340 |
Q |
| |
|
| ||||| |
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|
| T |
17650256 |
ttctatc |
17650262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 422
Target Start/End: Original strand, 17645840 - 17645901
Alignment:
| Q |
361 |
ctttactgtcaccaagcattttttcttcatctccatctcttgaataccctttctatccacat |
422 |
Q |
| |
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||||||||||||||||| ||||||| ||| || |||| | |||||||||||||||| ||||| |
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| T |
17645840 |
ctttactgtcaccaagccttttttcatcaccttcatcacctgaataccctttctattcacat |
17645901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 484
Target Start/End: Complemental strand, 17676068 - 17675986
Alignment:
| Q |
402 |
gaataccctttctatccacatctaccaaacatgatttcaagctctggtcctccgtctccactttctgcagccatttttccttc |
484 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||| | | ||||||||||||||||||| || ||| |||||||| |
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| T |
17676068 |
gaataccctttctatccacatctacaaaatgggattttaagtccggatcctccgtctccactttcttcaagcatatttccttc |
17675986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 465
Target Start/End: Original strand, 32670287 - 32670383
Alignment:
| Q |
369 |
tcaccaagcattttttcttcatctccatctcttgaataccctttctatccacatctaccaaacatgatttcaagctctggtcctccgtctccacttt |
465 |
Q |
| |
|
||||||| ||| |||||||| || |||| || |||| |||||||||||||||||||| ||| |||||| |||| ||| ||||||||||||||||| |
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|
| T |
32670287 |
tcaccaaacatgttttcttcgccttcatcactcgaatgccctttctatccacatctacaaaatgtgattttaagccctgatcctccgtctccacttt |
32670383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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