View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_high_6 (Length: 435)
Name: NF0919_high_6
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 40 - 419
Target Start/End: Complemental strand, 3314784 - 3314405
Alignment:
| Q |
40 |
taggagcagaataaggtgtgcatgtaaacagaatactctagcaattgccgaagtaaaagtgccaacctgcaaagcagctcgtaatatgtactgctcgtcg |
139 |
Q |
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| T |
3314784 |
taggagcagaataaggtgtgcatgtaaacagaatactctagcaattgccgaagtaaaagtgccaacctgcaaagcagctcgtaatatgtactgctcgtcg |
3314685 |
T |
|
| Q |
140 |
cgtgcctttggtcttgtgcctcctgccatataaggttgggtataatcaaatctagaagattgtgacatattaagggaattgaattcagcagatcgacttg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3314684 |
tgtgcctttggtcttgtgcctcctgccatataaggttgggtataatcaaatctagaagattgtgacatattaagggaattgaattcggcagatcgacttg |
3314585 |
T |
|
| Q |
240 |
taggtgcagggtgactgatgtcttcaataatgcaaacatcacagtcatcttcatcattggatccctcggtacttcttttggaaagttgagaatcaatact |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3314584 |
taggtgcagggtgactgatgtcttcaataatgcaaacatcacagtcatcttcatcattggatccctcggtacttcttttggaaagttgagaatcaatact |
3314485 |
T |
|
| Q |
340 |
tttacattcgcttggtttactctctagttcactcacactacaattatactgattcccattggcaattgatgctcgggcaa |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3314484 |
tttacattcgcttggtttactctctagttcactcatactacaattatactgattcccattggcaattgatgctcgggcaa |
3314405 |
T |
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