View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_high_7 (Length: 419)
Name: NF0919_high_7
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 4677878 - 4677472
Alignment:
| Q |
16 |
atgagtagactttgatgaatcgatgaaaaagactatggat----ccatagnnnnnnnnatcttgtcaacgaatgtctaaattttttgaaaagaagcatga |
111 |
Q |
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| T |
4677878 |
atgagtaaactttgatgaatcgataaaaaagactatggatggatccatagttttttttatcttgtcaacgaatgtctaaaatatttgagaagaagcatga |
4677779 |
T |
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| Q |
112 |
tgtgagacttccatcctaacaaactacgttagaaaaacatttataattagtttatcatactatatatttataacaaaattnnnnnnnnttgaaggtcttt |
211 |
Q |
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| T |
4677778 |
tgtgagacttccatcctaacaaactatgttagaaaaacatttataattagtttatcatactatatctttataacaaaattaaaaaaaattgaaggtcttt |
4677679 |
T |
|
| Q |
212 |
ttgtggcccataattttaaggtctaaagctctagcggagtcaattggattatccccaccctaatctaaataggtacagcattgatgtatttgtgtccaaa |
311 |
Q |
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| T |
4677678 |
ttgtggcccataattttaaggtctaaagctctagcggagtcaattggattatccccaccctaatctaaatagatacagcattgatgtatttgtgtcc-aa |
4677580 |
T |
|
| Q |
312 |
ggttaaattgtatagtgaactaaatatctcactcaatagacaatcctttaacaaaggatcaagccaaaacaatgtcgactcatcgtcacttaataatcta |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4677579 |
ggttaaattgtatagtgaactaaatatctcactcaatagacaaccctttaacaaaggatcaagccaaaacaatgtcgactcatcgtcacttgataatctc |
4677480 |
T |
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| Q |
412 |
tcgcataa |
419 |
Q |
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| T |
4677479 |
tcgcataa |
4677472 |
T |
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