View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_12 (Length: 410)
Name: NF0919_low_12
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 28651068 - 28651296
Alignment:
| Q |
33 |
caaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcagga |
132 |
Q |
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| T |
28651068 |
caaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctctcaaagcagga |
28651167 |
T |
|
| Q |
133 |
tcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcgtgatagaaca |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28651168 |
tcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcacaatagaaca |
28651267 |
T |
|
| Q |
233 |
tgcgtggaacttttgttactccatattct |
261 |
Q |
| |
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|||||||||||||||||||||||| |||| |
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| T |
28651268 |
tgcgtggaacttttgttactccattttct |
28651296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 28642204 - 28642435
Alignment:
| Q |
30 |
atccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagca |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28642204 |
atccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctctcaaagca |
28642303 |
T |
|
| Q |
130 |
ggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcgtgataga |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| | ||| | ||| |||||| ||||||||| ||||| |
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| T |
28642304 |
ggatcatcatggattccttttaagtcaattgtagggatacttagctttgaatttgattcattcactgaaacatcattgatactagattgttcacaataga |
28642403 |
T |
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| Q |
230 |
acatgcgtggaacttttgttactccatattct |
261 |
Q |
| |
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||||| ||||||||||||||||||||| |||| |
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| T |
28642404 |
acatgtgtggaacttttgttactccattttct |
28642435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 28670802 - 28671018
Alignment:
| Q |
45 |
tggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggatt |
144 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||| |
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| T |
28670802 |
tggaattccatgatttattacttgaaagaatccccatttctcacttgcatttcgaacttttcttacaacttcatctctcaaaacaggatcatcatggatt |
28670901 |
T |
|
| Q |
145 |
ccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcgtgatagaacatgcgtggaactt |
244 |
Q |
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||| |||||||||||||||||| ||||||||||| |||| ||||| | ||| ||||| ||||||| ||||||||| |||||||||||||||||||| |
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| T |
28670902 |
cctgttaagtcaattgtagggacactaagctttgaatttgattcatttactgaaccatgattgatattagattgttcacaatagaacatgcgtggaactt |
28671001 |
T |
|
| Q |
245 |
ttgttactccatattct |
261 |
Q |
| |
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|||||||||||| |||| |
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| T |
28671002 |
ttgttactccattttct |
28671018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 28674946 - 28675162
Alignment:
| Q |
45 |
tggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggatt |
144 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||| |||||| |
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| T |
28674946 |
tggaattccatgatttatcacttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggatt |
28675045 |
T |
|
| Q |
145 |
ccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttcgtgatagaacatgcgtggaactt |
244 |
Q |
| |
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||| ||||||||||||||||||| ||||||||| |||| |||||||| || || ||||||| ||||||||| || |||||| |||||||||| |
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| T |
28675046 |
cctgttaagtcaattgtagggatgctaagctttaaatttgattcactgattgagagatcattgatattagattgttcacaatggaacatacgtggaactt |
28675145 |
T |
|
| Q |
245 |
ttgttactccatattct |
261 |
Q |
| |
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|||| || |||| |||| |
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| T |
28675146 |
ttgtgacaccattttct |
28675162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 28691407 - 28691549
Alignment:
| Q |
30 |
atccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagca |
129 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||| |||||||||||||| || |
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| T |
28691407 |
atccaaaacatgagctgaaattccatgatttattacttgaaagaatccccacttctcacatgcattttcaacttttctcacagcttcatctctcaaaaca |
28691506 |
T |
|
| Q |
130 |
ggatcatcatggattccttttaagtcaattgtagggatactaa |
172 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
28691507 |
agatcatcatggattcctgttaggtcaattgtagggatactaa |
28691549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 28696307 - 28696445
Alignment:
| Q |
45 |
tggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggatt |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||| ||||| || |||||| ||||||| |
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| T |
28696307 |
tggaattccatgatttattacttgaaagaatccccaattctcacttgcattttgaacttttctcacaacttcatctttcaaaacaagatcattatggatt |
28696406 |
T |
|
| Q |
145 |
ccttttaagtcaattgtagggatactaagctttggattt |
183 |
Q |
| |
|
||| ||| |||||||| |||||||| ||||||| |||| |
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|
| T |
28696407 |
cctgttaggtcaattggtgggatacttagctttgaattt |
28696445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 28741514 - 28741621
Alignment:
| Q |
82 |
ttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggat |
181 |
Q |
| |
|
||||||| || ||||| || || |||||||||| |||||||||| || ||||||||||||||||| ||| |||||| || ||||||||| ||||| || |
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|
| T |
28741514 |
ttctcacatgaattttgaacttttctcacaactgtatctctcaaaacaagatcatcatggattcctggtaaatcaattctacggatactaatctttgaat |
28741613 |
T |
|
| Q |
182 |
ttaattca |
189 |
Q |
| |
|
|| ||||| |
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|
| T |
28741614 |
ttcattca |
28741621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 28733368 - 28733457
Alignment:
| Q |
128 |
caggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagatt |
217 |
Q |
| |
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|||||||||||||||||||| ||| |||||| |||||||||||| ||||| |||| ||||| || ||| | ||| |||||||| ||||| |
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|
| T |
28733368 |
caggatcatcatggattcctggtaaatcaattctagggatactaatctttgaattttattcattgactgaaacatcgttgatattagatt |
28733457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 28717610 - 28717651
Alignment:
| Q |
30 |
atccaaaacatgaactggaattccatgatttattacttgaaa |
71 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
28717610 |
atccaaaacatgagttgaaattccatgatttattacttgaaa |
28717651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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