View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_14 (Length: 364)
Name: NF0919_low_14
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 1530043 - 1530273
Alignment:
| Q |
28 |
taatagcaatccgattataatactttggaagcccacttacaaataaaaaaccaccatatattttgaaggagttgcacctagataaatgaaagaataattt |
127 |
Q |
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| T |
1530043 |
taatagcaatccgattataatactttggaagcccacttacaaataaaaaaccaccatatattttgaaggagttgcacgtaaataaatggaagaataattt |
1530142 |
T |
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| Q |
128 |
ttggatcaatagatgaatgaatgtaatgttaattatatgaaacaatacattaacaaaataatcatatggaaaggaaactagttattatgatcatctttgg |
227 |
Q |
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| T |
1530143 |
ttggatcaatacatgaatgaatgtaatgttaattatatgaaacaatacattaacaaaataatcatatggaaaggaaactagttagtatgatcatctttgg |
1530242 |
T |
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| Q |
228 |
ttatattgtttttggccctcattctactacc |
258 |
Q |
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| T |
1530243 |
ttatattgtttttggccctcattctactacc |
1530273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 1515896 - 1516043
Alignment:
| Q |
111 |
aaatgaaagaataatttttggatcaatagatgaatgaatgtaatgttaattatatgaaacaatacattaacaaaataatcatatggaaaggaaactagtt |
210 |
Q |
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| T |
1515896 |
aaatgaaagaataatttttggatcaatacatgaatgaatgtaatgttaattatatgaaacaatacattaacaaaataatcatatggaaaggaaactagtt |
1515995 |
T |
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| Q |
211 |
attatgatcatctttggttatattgtttttggccctcattctactacc |
258 |
Q |
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| T |
1515996 |
agtatgatcatctttggttatattgtttttggccctcattctactacc |
1516043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 7978615 - 7978459
Alignment:
| Q |
113 |
atgaaagaataatttttggatcaatagatgaatgaatgtaatgttaattatatgaaacaatacattaacaaaataatcatatggaaagg----------- |
201 |
Q |
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| T |
7978615 |
atgaaagaatattctttggatcaatacatgaatgaatgtactgttaatcatatgaaacattac---aacaaaataatcacagtgaaaggaagcttgaaaa |
7978519 |
T |
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| Q |
202 |
aaactagttattatgatcatctttggtta---tattgtttttggccctcattctactacc |
258 |
Q |
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| T |
7978518 |
aaactagttattatgatcatctttgttgatagtattgtttttggccctcattctcctacc |
7978459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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