View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_18 (Length: 350)
Name: NF0919_low_18
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 95 - 273
Target Start/End: Complemental strand, 36200067 - 36199889
Alignment:
| Q |
95 |
catgggatttacgaagaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatg |
194 |
Q |
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| T |
36200067 |
catgggatttacgaagaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatg |
36199968 |
T |
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| Q |
195 |
gataaccggtgggtcatggctatgtagatacaaaagtcctctcaggatctgtatgcaccaatgcttcactgctcctatg |
273 |
Q |
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| T |
36199967 |
gataaccggtgggtcatggctatgtagatacaaaagtcctctcaggatctgtatgcaccaatgcttcactgctcttatg |
36199889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 268
Target Start/End: Original strand, 47005712 - 47005880
Alignment:
| Q |
100 |
gatttacgaagaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatggataa |
199 |
Q |
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| T |
47005712 |
gatttgcggagaattgcagcaaggccgagatcgccaattttgacttctccttggttaccattgacgaaaatattatcacacttgagatctctatggatca |
47005811 |
T |
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| Q |
200 |
ccggtgggtcatggctatgtagatacaaaagtcctctcaggatctgtatgcaccaatgcttcactgctc |
268 |
Q |
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| T |
47005812 |
caggagggtcatggctgtggagatagacaagaccttccaaaatctgcctgcaccaatgcttaactgctc |
47005880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 95 - 268
Target Start/End: Original strand, 47354317 - 47354490
Alignment:
| Q |
95 |
catgggatttacgaagaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatg |
194 |
Q |
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| T |
47354317 |
catgtgatttccggagaattgctgccaaaccaagatccccaatcttcacttccccttgatttccattaatgaaaatattatcacatttaagatctctatg |
47354416 |
T |
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| Q |
195 |
gataaccggtgggtcatggctatgtagatacaaaagtcctctcaggatctgtatgcaccaatgcttcactgctc |
268 |
Q |
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| T |
47354417 |
gatcacaggtgggtcgtggctatgaagataatgaagtccttgcaggatctgtctacaccaatgcttcactgctc |
47354490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 31952043 - 31952154
Alignment:
| Q |
109 |
agaattgcggctaggccaagatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatggataaccggtgggt |
208 |
Q |
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| T |
31952043 |
agaattgcagctagtccaaggtcaccaattttcacttgtccaagatgaccattgacaaatatgttatcacattttaggtccctatggattacaggtggat |
31952142 |
T |
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| Q |
209 |
catggctatgta |
220 |
Q |
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| T |
31952143 |
catggccatgta |
31952154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 43707427 - 43707355
Alignment:
| Q |
127 |
agatccccaattttgacttctccttgatttccattgataaaaatgttatcacatttgagatctctatggataa |
199 |
Q |
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| T |
43707427 |
agatctccaatcttaacttctccttgatgaccatttataaatatgttatcacacttgacatccctatgtataa |
43707355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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