View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_20 (Length: 332)
Name: NF0919_low_20
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 98 - 303
Target Start/End: Complemental strand, 28436852 - 28436647
Alignment:
| Q |
98 |
actttccacacgagaaattgaattctccttgttgagaataaagatagttatttgaattcatttcttgaccaggaactaatgtgtcggcgaaatgattgaa |
197 |
Q |
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| T |
28436852 |
actttccatgcgagaaattgaattctccttgtcgagaataaagatagttatttgaattcatttcttgaccaggaactaatgtgtcggtgaaatgattgaa |
28436753 |
T |
|
| Q |
198 |
actctgccataatacaacataattttggtctagtaatagaaaatttccatcatccttcattaaacctcttgaaattctacctaaagaaaaatatgatgat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
28436752 |
actctgccataatacaacataattttggtctagtaatagaaaatttccatcatccttcattagacctcttgaaattctgcctaaagaaaaatatgatgat |
28436653 |
T |
|
| Q |
298 |
gtccat |
303 |
Q |
| |
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||||| |
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| T |
28436652 |
ctccat |
28436647 |
T |
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