View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_26 (Length: 320)
Name: NF0919_low_26
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 38107732 - 38107599
Alignment:
| Q |
103 |
acacacccctccaatcatcagataaaacttgagacatccttggagaggatgttctaaataagtaattctcatgtcaccttcactactcgtgttggcaaga |
202 |
Q |
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| T |
38107732 |
acacacccctccaatcatcagataaaatttgagacatccttggaggggatgttctaaataagtaattctcatgtcaccttcactactcgtgttggcaaga |
38107633 |
T |
|
| Q |
203 |
acatccacacaccagttaacttctcgatacacat |
236 |
Q |
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|||||| |||||| |||||||||||||||||||| |
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| T |
38107632 |
acatccgcacaccggttaacttctcgatacacat |
38107599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 22007878 - 22007744
Alignment:
| Q |
103 |
acacacccctccaatcatcagataaaacttgagacatccttggagagg-atgttctaaataagtaattctcatgtcaccttcactactcgtgttggcaag |
201 |
Q |
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|||||||||| ||||||||||||||||| || ||||||||||| | || |||||||||||||||||||||||| |||| |||||||| | |||||||||| |
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| T |
22007878 |
acacacccctacaatcatcagataaaacctgggacatccttggtgggggatgttctaaataagtaattctcatctcacattcactacccatgttggcaag |
22007779 |
T |
|
| Q |
202 |
aacatccacacaccagttaacttctcgatacacat |
236 |
Q |
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||||| |||||| |||| ||||||||||||||| |
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| T |
22007778 |
aacatatgcacacctgttagcttctcgatacacat |
22007744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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