View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_27 (Length: 318)
Name: NF0919_low_27
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_27 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: scaffold0531 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 3333 - 3473
Alignment:
| Q |
83 |
acaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccattt |
182 |
Q |
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| T |
3333 |
acaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtacctatcaaaacgttttccaggaaccatttcatgcatctcaaccattt |
3432 |
T |
|
| Q |
183 |
gccacaatgtatacagagtgatgatccatgataagataagt |
223 |
Q |
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| T |
3433 |
gccacaatgtatacagagtgatgatccatgataagataagt |
3473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 8031999 - 8031859
Alignment:
| Q |
83 |
acaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccattt |
182 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
8031999 |
acaatataaaggcctaacttttcgccaaacgcatgttgacctaattcatggtatctatcaaaacgttttcccggaatcatttcatgcatctcaaccattt |
8031900 |
T |
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| Q |
183 |
gccacaatgtatacagagtgatgatccatgataagataagt |
223 |
Q |
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| T |
8031899 |
gccacaatgtatacagagtgatggtccatgataagagaagt |
8031859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 7979378 - 7979508
Alignment:
| Q |
83 |
acaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccattt |
182 |
Q |
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| T |
7979378 |
acaatataaagacctaattttttcccaaaagcatgttgacctaattcatggtatctatcaaagcgttttcccggaaccatttcatgcatctcaaccattt |
7979477 |
T |
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| Q |
183 |
gccacaatgtatacagagtgatgatccatga |
213 |
Q |
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| T |
7979478 |
gccaaagtgtgtagaatgtgatgatccatga |
7979508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 7971822 - 7971940
Alignment:
| Q |
95 |
cctaacttttcgccaaacgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtat |
194 |
Q |
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| T |
7971822 |
cctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatctcatgcatctcaaccatttgccacaaggtgt |
7971921 |
T |
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| Q |
195 |
acagagtgatgatccatga |
213 |
Q |
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|||| |||||||||||||| |
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| T |
7971922 |
acagtgtgatgatccatga |
7971940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 8041866 - 8041748
Alignment:
| Q |
95 |
cctaacttttcgccaaacgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtat |
194 |
Q |
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| T |
8041866 |
cctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatctcatgcatctcaaccatttgccacaaggtgt |
8041767 |
T |
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| Q |
195 |
acagagtgatgatccatga |
213 |
Q |
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|||| |||||||||||||| |
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| T |
8041766 |
acagtgtgatgatccatga |
8041748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 41382221 - 41382349
Alignment:
| Q |
95 |
cctaacttttcgccaaacgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtat |
194 |
Q |
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| T |
41382221 |
cctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccatctcatgcatctcaaccatttgccacagggtgt |
41382320 |
T |
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| Q |
195 |
acagagtgatgatccatgataagataagt |
223 |
Q |
| |
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| ||||||||||||||||| | ||||||| |
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| T |
41382321 |
agagagtgatgatccatgaaaggataagt |
41382349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 43853219 - 43853128
Alignment:
| Q |
128 |
tcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagat |
219 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| | || || || ||||| |||||||||||||| |
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| T |
43853219 |
tcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccatgataagat |
43853128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 14198773 - 14198878
Alignment:
| Q |
81 |
caacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccat |
180 |
Q |
| |
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|||||||||| || || |||||||| ||||| || | ||| ||||||||||| |||||||| |||||||| || || ||||||||||||||||||||||| |
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| T |
14198773 |
caacaatatacagacccaacttttcaccaaaagcatattgacccagttcatgatatctatcgaaacgtttcccgggtaccatttcatgcatctcaaccat |
14198872 |
T |
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| Q |
181 |
ttgcca |
186 |
Q |
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|||||| |
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| T |
14198873 |
ttgcca |
14198878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 38827416 - 38827453
Alignment:
| Q |
149 |
tttccaggaaccatttcatgcatctcaaccatttgcca |
186 |
Q |
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||||| ||||| |||||||||||||||||||||||||| |
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| T |
38827416 |
tttccgggaactatttcatgcatctcaaccatttgcca |
38827453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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