View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0919_low_30 (Length: 292)

Name: NF0919_low_30
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0919_low_30
NF0919_low_30
[»] chr5 (8 HSPs)
chr5 (30-282)||(34230940-34231192)
chr5 (78-232)||(34239031-34239185)
chr5 (30-279)||(42125219-42125477)
chr5 (36-251)||(42130481-42130696)
chr5 (30-274)||(41711912-41712158)
chr5 (31-193)||(41570143-41570305)
chr5 (136-222)||(42118703-42118789)
chr5 (35-118)||(42118787-42118871)
[»] chr6 (1 HSPs)
chr6 (36-251)||(25521154-25521375)
[»] chr3 (1 HSPs)
chr3 (30-251)||(8524705-8524932)
[»] chr2 (1 HSPs)
chr2 (39-274)||(12250054-12250289)
[»] chr4 (1 HSPs)
chr4 (36-279)||(11120005-11120245)
[»] chr1 (1 HSPs)
chr1 (163-279)||(15590822-15590938)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 34230940 - 34231192
Alignment:
Q  30 gtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatctt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230940 gtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatctt 34231039  T
Q  130 gctgggaatgataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattatacagacatgt 229  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34231040 tctgggaatgataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattatacagacatgt 34231139  T
Q  230 ctttgataagaccaaactccataaacttgctcttcaatcaatctttctctctg 282  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34231140 ctttgataagaccaaactccataaacttgctcttcaatcgatctttctctctg 34231192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 34239031 - 34239185
Alignment:
Q  78 tgaaattccttctcaaatctcggacctttccaaattacaatcacttcatcttgctgggaatgataagttagtttggaaagagactaccttgaagagactt 177  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||| ||||| |||||||||    
T  34239031 tgaaattccttctcaaatctcatacctttccaaattacaatcacttcatctttctgggcattatgagttagtttggaaagagaccaccttaaagagactt 34239130  T
Q  178 gtgcaaaacgcaacaagtttaagggagctgtttttggattatacagacatgtctt 232  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  34239131 gtgcaaaacgcaacaagtttaagggagctgtttttggattattcagatatgtctt 34239185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 42125477 - 42125219
Alignment:
Q  30 gtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatctt 129  Q
    ||||||||||||| ||||||| |||||||||  | |||||||| ||| |||||||||   |||||||||  ||||||||||||||||||||||||||||     
T  42125477 gtttatgagtcttgcacatcttgacttgtctcgtagtttctttaaaggtgaaattccaattcaaatctcacacctttccaaattacaatcacttcatctc 42125378  T
Q  130 gctgggaat---------gataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattata 220  Q
     ||||  ||         ||| ||||||||||||||||||| |||||||||||| |||| ||||| ||||||| ||| |||||||||||||||||| |||    
T  42125377 tctggatataccggttatgatcagttagtttggaaagagacgaccttgaagagatttgttcaaaatgcaacaaatttgagggagctgtttttggataata 42125278  T
Q  221 cagacatgtctttgataagaccaaactccataaacttgctcttcaatcaatctttctct 279  Q
    || | |||||||  |||||||||||||||||    ||||||||||| ||||||| ||||    
T  42125277 caaatatgtcttcaataagaccaaactccattgctttgctcttcaaccaatcttcctct 42125219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 42130696 - 42130481
Alignment:
Q  36 gagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatcttgctggg 135  Q
    ||||||||||||||| |||||||||  | ||  |||  ||| |||||||||  ||||||||||  |||| |||||||||||||||||||||||  |||      
T  42130696 gagtcttacacatcttgacttgtctgatagtaacttagaaggtgaaattccaactcaaatctctcacctatccaaattacaatcacttcatctctctgaa 42130597  T
Q  136 aatgataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattatacagacatgtctttga 235  Q
    ||| || | ||| ||||||||||||||||||||||||| ||  ||||||| ||||||  |||| | |||||||||||||| |  ||||| |||||||  |    
T  42130596 aattatgacttaatttggaaagagactaccttgaagaggctgttgcaaaatgcaacagatttacgagagctgtttttggactccacagatatgtcttcaa 42130497  T
Q  236 taagaccaaactccat 251  Q
    ||||||||||||||||    
T  42130496 taagaccaaactccat 42130481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 41711912 - 41712158
Alignment:
Q  30 gtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatctt 129  Q
    |||| |||||||| ||||||| ||| |||||| | ||| |||| ||| |||||||||   |||||||||  |||| |||||||||||||||||||||||     
T  41711912 gtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtgaaattccaattcaaatctcacacctctccaaattacaatcacttcatctc 41712011  T
Q  130 gctgggaatgataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaac--aagtttaagggagctgtttttggattatacagacat 227  Q
     ||  |||| || | |||||||||||||| || ||||| || || ||| |||||||||||||  |  ||||||  | || ||||||||| | ||||| ||    
T  41712012 tctcagaattatgaattagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatatttaagcaaactatttttggatgacacagatat 41712111  T
Q  228 gtctttgataagaccaaactccataaacttgctcttcaatcaatctt 274  Q
    |||||  |||| ||||||||||||  | |||||||||||||| ||||    
T  41712112 gtcttcaataaaaccaaactccatggatttgctcttcaatcattctt 41712158  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 41570143 - 41570305
Alignment:
Q  31 tttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatcttg 130  Q
    |||| ||||||||||||||| ||||||||||| |||  ||||||||  ||| ||||| ||||||||||  ||||||   |||||  |||||||| ||||     
T  41570143 tttaagagtcttacacatcttgacttgtcttcgtgtaactttcaaggcgaagttcctcctcaaatctcataccttttgcaattaacatcacttcgtcttt 41570242  T
Q  131 ctgggaatgataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaa 193  Q
    ||   |||||  |||||  ||||||||| || || ||||||||||||||||||||||||||||    
T  41570243 ctaaaaatgacgagttaagttggaaagaaaccactttgaagagacttgtgcaaaacgcaacaa 41570305  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 42118789 - 42118703
Alignment:
Q  136 aatgataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattataca 222  Q
    |||||| | ||||||||||||||||| |||||||||||| |||| ||||| ||||||| ||| |||||| ||||||||||| |||||    
T  42118789 aatgatgaattagtttggaaagagacgaccttgaagagatttgttcaaaatgcaacaaatttgagggagatgtttttggataataca 42118703  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 42118871 - 42118787
Alignment:
Q  35 tgagtcttacacatctcgacttgtcttcttg-tttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaat 118  Q
    |||||||||||||||| |||||||||  | | ||||||| ||| |||||||||  ||||||||||  || | |||||||||||||    
T  42118871 tgagtcttacacatcttgacttgtctcatagttttctttaaaggtgaaattccaactcaaatctcacacttatccaaattacaat 42118787  T

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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 25521154 - 25521375
Alignment:
Q  36 gagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatcttgctggg 135  Q
    |||||||||||||||  ||||||||  | |||||||| ||| | |||||||  ||||||||||  ||||||||||||||||||||||||||||| |||||    
T  25521154 gagtcttacacatctttacttgtctggtagtttctttaaaggtaaaattccaactcaaatctcacacctttccaaattacaatcacttcatctttctggg 25521253  T
Q  136 aat----gataagtt--agtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattatacagacatgt 229  Q
     ||    | || |||  ||||||||||||||| | ||| ||||| ||| ||||||| ||||||| ||||  |||| ||||||||||||||||| | ||||    
T  25521254 tattttggttatgttttagtttggaaagagaccatcttaaagaggcttttgcaaaatgcaacaaatttacaggagttgtttttggattatacaaatatgt 25521353  T
Q  230 ctttgataagaccaaactccat 251  Q
    |||  |||||||||||||||||    
T  25521354 cttctataagaccaaactccat 25521375  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 8524932 - 8524705
Alignment:
Q  30 gtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatctt 129  Q
    |||| ||||||| |||||||| |||||||||  | ||| | || ||| |||||||||  ||||||||||  |||||| |||||||||||||||||||||     
T  8524932 gtttttgagtctcacacatcttgacttgtctcatagttaccttaaaggtgaaattccaactcaaatctcacacctttgcaaattacaatcacttcatctc 8524833  T
Q  130 gctgggaatgat------aagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattatacag 223  Q
     |||||  | ||      || ||||||||||||||||  |||||||||||||||||||||||||||||||  || |||||| ||||||||||| ||||||    
T  8524832 tctgggtcttatcaatacaatttagtttggaaagagagcaccttgaagagacttgtgcaaaacgcaacaaacttgagggagttgtttttggatgatacag 8524733  T
Q  224 acatgtctttgataagaccaaactccat 251  Q
    |  ||||||   ||||||||||||||||    
T  8524732 atttgtcttcattaagaccaaactccat 8524705  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 274
Target Start/End: Complemental strand, 12250289 - 12250054
Alignment:
Q  39 tcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatcttgctgggaat 138  Q
    |||||||||||| |||||||||  | |||||||| ||| |||| ||||  ||||||||||  |||||||||||||| |||||||||||||  | | ||||    
T  12250289 tcttacacatcttgacttgtctaatagtttctttaaaggtgaagttccaactcaaatctcacacctttccaaattagaatcacttcatctctccgagaat 12250190  T
Q  139 gataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattatacagacatgtctttgataa 238  Q
      | | ||| |||||   || || || ||||||||  |||||||||| ||||||| ||| |||||||| |||||  || | ||| |||||||||  ||||    
T  12250189 tttgatttaatttggggggaaaccacgttgaagaggtttgtgcaaaatgcaacaaatttgagggagctatttttaaatcaaacaaacatgtcttcaataa 12250090  T
Q  239 gaccaaactccataaacttgctcttcaatcaatctt 274  Q
    ||| |||||||||||| || ||||||||| ||||||    
T  12250089 gactaaactccataaattttctcttcaataaatctt 12250054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 279
Target Start/End: Complemental strand, 11120245 - 11120005
Alignment:
Q  36 gagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatctcggacctttccaaattacaatcacttcatcttgctggg 135  Q
    |||||||||||||||  ||||||||| | ||  | || | | |||||||||  ||||||||||  | ||||||||||||||||| ||| ||||  |||||    
T  11120245 gagtcttacacatctttacttgtcttatagtaacatttatggtgaaattccaactcaaatctcatatctttccaaattacaatccctttatctctctggg 11120146  T
Q  136 aatgataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattatacagacatgtctttga 235  Q
    ||||   ||||||||| ||||||||  |||||||| |||||  ||||||| ||||||  ||||   |||||||||||| ||   ||  | |||||||  |    
T  11120145 aatg---agttagttttgaaagagatcaccttgaacagactgctgcaaaatgcaacagatttacaagagctgtttttgtatagaactaatatgtcttcaa 11120049  T
Q  236 taagaccaaactccataaacttgctcttcaatcaatctttctct 279  Q
    |||||||||||||| |    ||||||||||| ||||||| ||||    
T  11120048 taagaccaaactcctttcctttgctcttcaaccaatcttcctct 11120005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 15590938 - 15590822
Alignment:
Q  163 accttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtttttggattatacagacatgtctttgataagaccaaactccataaacttgctct 262  Q
    ||||||||||| ||||||||||| ||||||| ||||| | ||||  ||||| || | ||| | |||||||  |||| ||||||  |||| || ||| |||    
T  15590938 accttgaagaggcttgtgcaaaatgcaacaaatttaaagcagctacttttgtatgacacaaatatgtcttcaataaaaccaaaacccatcaatttgatct 15590839  T
Q  263 tcaatcaatctttctct 279  Q
     ||||||||||| ||||    
T  15590838 ccaatcaatcttcctct 15590822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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