View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0919_low_31 (Length: 286)

Name: NF0919_low_31
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0919_low_31
NF0919_low_31
[»] chr2 (4 HSPs)
chr2 (59-244)||(18437871-18438056)
chr2 (59-244)||(18442148-18442333)
chr2 (59-244)||(18447277-18447462)
chr2 (59-244)||(18433592-18433777)
[»] scaffold0650 (1 HSPs)
scaffold0650 (59-179)||(8689-8809)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 18437871 - 18438056
Alignment:
Q  59 gtacatgctgcataagcacccataaacattctcactaatctacattgagaagcacacttgccaagacaaccgattgtcgacgatattgaagaaagttcgg 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18437871 gtacaagctgcataagcacccataaacattctcactaatctacattgagaagcacacttgccaagacaaccgattgtcgacgatattgaagaaagttcgg 18437970  T
Q  159 gtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctca 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18437971 gtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctca 18438056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 18442148 - 18442333
Alignment:
Q  59 gtacatgctgcataagcacccataaacattctcactaatctacattgagaagcacacttgccaagacaaccgattgtcgacgatattgaagaaagttcgg 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18442148 gtacaagctgcataagcacccataaacattctcactaatctacattgagaagcacacttgccaagacaaccgattgtcgacgatattgaagaaagttcgg 18442247  T
Q  159 gtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctca 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18442248 gtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctca 18442333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 18447277 - 18447462
Alignment:
Q  59 gtacatgctgcataagcacccataaacattctcactaatctacattgagaagcacacttgccaagacaaccgattgtcgacgatattgaagaaagttcgg 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18447277 gtacaagctgcataagcacccataaacattctcactaatctacattgagaagcacacttgccaagacaaccgattgtcgacgatattgaagaaagttcgg 18447376  T
Q  159 gtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctca 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18447377 gtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattattatcaccaatattgaaactatctttttcatctca 18447462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 18433592 - 18433777
Alignment:
Q  59 gtacatgctgcataagcacccataaacattctcactaatctacattgagaagcacacttgccaagacaaccgattgtcgacgatattgaagaaagttcgg 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18433592 gtacaagctgcataagcacccataaacattctcactaatctacattgagaagcacacttgcaaagacaaccgattgtcgacgatattgaagaaagttcgg 18433691  T
Q  159 gtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccaatattgaaactatctttttcatctca 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18433692 gtgttgatgacatagggagagaatcatcagcttgagcaacaacgaacattatcatcaccattattgaaactatctttttcatctca 18433777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 8689 - 8809
Alignment:
Q  59 gtacatgctgcataagcacccataaacattctcactaatctacattgagaagcacacttgccaagacaaccgattgtcgacgatattgaagaaagttcgg 158  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8689 gtacaagctgcataagcacccataaacattctcactaatctacattgagaagcacacttgcaaagacaaccgattgtcgacgatattgaagaaagttcgg 8788  T
Q  159 gtgttgatgacatagggagag 179  Q
    |||||||||||||||||||||    
T  8789 gtgttgatgacatagggagag 8809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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