View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_38 (Length: 251)
Name: NF0919_low_38
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 9125979 - 9126198
Alignment:
| Q |
19 |
atgcaatgcaaatatcaaagttgcgcgtgaacattgtcatattattacattgtaaggtataaaccagctgtcaagtaaccttgcctcaacaggcaattgt |
118 |
Q |
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| T |
9125979 |
atgcaatgcaaatatcaaagttgagcgtgaacattgtcat--tattacattgtaaggtataaacgaactgtcaagtaaccttgccacaacatgcaattgt |
9126076 |
T |
|
| Q |
119 |
catccttgtttgtatttcaatatggacgattccttttcccggttaaatctttcatttttctttatctacctcagagaaaacttcatgcttggtattcaag |
218 |
Q |
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|||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
9126077 |
catcgttgtttttatttcaatatagacgatttcttttcccggttaaatctttcatttttctttatctacctcggagaaaacttcatgcttgatattcaag |
9126176 |
T |
|
| Q |
219 |
cactttatttataaatcaacat |
240 |
Q |
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||||||||| |||||||||||| |
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| T |
9126177 |
cactttattaataaatcaacat |
9126198 |
T |
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