View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_4 (Length: 603)
Name: NF0919_low_4
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_4 |
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| [»] scaffold0510 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 73 - 293
Target Start/End: Complemental strand, 21150692 - 21150472
Alignment:
| Q |
73 |
cttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggtaacaccaacttcacaatattagtctcataaccaaaaataaac |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||| ||| |
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| T |
21150692 |
cttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggcagtggtaacatcaacatcacaatattagtcccataaccaaaaatcaac |
21150593 |
T |
|
| Q |
173 |
tcaccctcattgttggtagattgaacttgttctagtgagtatttggatttgcgtctgcctcacattttttgtgtcctgttttgatatgaatgtgaatttt |
272 |
Q |
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||||||| ||| | || |||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||| |||| |||||| ||||||||| |
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| T |
21150592 |
tcacccttattagttgttgattgaacatgttctagtgagtatttggatttgcatctgcctcacatttctcgtgtcctgatttggtatgaacgtgaatttt |
21150493 |
T |
|
| Q |
273 |
gtgaagctagaattcaagctt |
293 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
21150492 |
gtgaagctaaaattcaagctt |
21150472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 86 - 518
Target Start/End: Complemental strand, 33714308 - 33713901
Alignment:
| Q |
86 |
agaagcattctctttgacaggctcattatttgtagaggtagtggtaacaccaacttcacaatattagtctcat---aaccaaaaataaa-ctcaccctca |
181 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||| |||||||| | |
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| T |
33714308 |
agaagcattctctttgacaggctcattatttgtagaggtagttgtaaca------tcacaatattagtctcatcataaccaaaaaaaaaactcaccctta |
33714215 |
T |
|
| Q |
182 |
ttgttggtagattgaacttgttctagtgagtatttggatttgcgtctgcctcacattttttgtgtcctgttttgatatgaatgtgaattttgtgaagcta |
281 |
Q |
| |
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|| ||||||||||||| |||| | |||||||||||||| |||||||||||||||||| | |||| || |||| |||||| |||||||||||||||||| |
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| T |
33714214 |
ttagtggtagattgaacatgttttggtgagtatttggatatgcgtctgcctcacatttctcgtgtaatgatttgctatgaacgtgaattttgtgaagcta |
33714115 |
T |
|
| Q |
282 |
gaattcaagcttctttctatatgtgtgtttgatgccttctggacgcagttccaaacagactattatattggcacctattcaaaatattgtagcctaatca |
381 |
Q |
| |
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||||||||||||| |||||| | ||||||||||| ||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
33714114 |
taattcaagcttctctctatacacgcatttgatgccttttggacgcagttcctaacagacta----------------------tattgtaggctaatca |
33714037 |
T |
|
| Q |
382 |
aagattatatactccgtacgagctttagttaccgatatttgagaacaagagagaattatgtgattgaacttatggcttacannnnnnnatcaaaatgtaa |
481 |
Q |
| |
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|| || | |||||| |||| ||| |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||| |
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| T |
33714036 |
aatataacatactctgtacaagccatagttaccaatatttgagaacaagagagtattatctgattgaacttatggctta-aatttttgatcaaaatgtaa |
33713938 |
T |
|
| Q |
482 |
ttcatttctttgtatagataagataactagatttcaa |
518 |
Q |
| |
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|| ||||||||||| |||||||||||||||||||||| |
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|
| T |
33713937 |
ttaatttctttgtacagataagataactagatttcaa |
33713901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 142 - 438
Target Start/End: Complemental strand, 23897260 - 23896981
Alignment:
| Q |
142 |
cacaatattagtctcataaccaaaaataaactcaccctcattgttggtagattgaacttgttctagtgagtatttggatttgcgtctgcctcacattttt |
241 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |||| | |||||||||||||||||||| ||||||||| | |
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| T |
23897260 |
cacaatattagtctcataaccaagaataaactcaccattattagtggtagattgaacatgtttcaagaagtatttggatttgcgtctgtctcacatttct |
23897161 |
T |
|
| Q |
242 |
tgtgtcctgttttgatatgaatgtgaattttgtgaagctagaattcaag-cttctttctatatgtgtgtttgatgccttctggacgcagttccaaacaga |
340 |
Q |
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|||||| | ||||||||| ||||||| || | ||| | |||||| ||| |||| |||||| ||||||||||| |||||||| |
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| T |
23897160 |
cgtgtcccg-----------------attttgtga-gctagaactccactcttttctctatacgtgggtttaatgcctgttggacgcagtttcaaacaga |
23897079 |
T |
|
| Q |
341 |
ctattatattggcacctattcaaaatattgtagcctaatcaaagattatatactccgtacgagctttagttaccgatatttgagaacaagagagaatt |
438 |
Q |
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|||||||||| | |||||||||| ||||||||||||||||||| || ||| |||| |||||||| |||||||| |||||||||||||||| ||||| |
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| T |
23897078 |
ctattatatttgtacctattcaatatattgtagcctaatcaaatataatacactctctacgagctaaagttaccggtatttgagaacaagagcgaatt |
23896981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 33726424 - 33726332
Alignment:
| Q |
47 |
tcctttgggagaaggagaaggatccgcttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggtaacaccaac |
139 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||| |||| |
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| T |
33726424 |
tcctttgggagaaggagaaggatccacttcattaatatctgaagccttctctttgacgggctcattatttggagaggtagtggtaacatcaac |
33726332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 21241744 - 21241801
Alignment:
| Q |
73 |
cttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggt |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |
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|
| T |
21241744 |
cttcatgaatatcagaagcattctctttgacagagtcataatttgcagaggtagtggt |
21241801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 21286971 - 21286911
Alignment:
| Q |
66 |
ggatccgcttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtag |
126 |
Q |
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|||||| |||||||||||||||||||||||||| |||||| |||| ||||| |||||||| |
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| T |
21286971 |
ggatccacttcatgaatatcagaagcattctctatgacagagtcataatttgcagaggtag |
21286911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 515
Target Start/End: Complemental strand, 21257259 - 21257215
Alignment:
| Q |
471 |
tcaaaatgtaattcatttctttgtatagataagataactagattt |
515 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||| ||||||| |
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|
| T |
21257259 |
tcaaaatgtaattgatttctttgtgtagataagataagtagattt |
21257215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 142 - 438
Target Start/End: Original strand, 780 - 1059
Alignment:
| Q |
142 |
cacaatattagtctcataaccaaaaataaactcaccctcattgttggtagattgaacttgttctagtgagtatttggatttgcgtctgcctcacattttt |
241 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |||| | |||||||||||||||||||| ||||||||| | |
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|
| T |
780 |
cacaatattagtctcataaccaagaataaactcaccattattagtggtagattgaacatgtttcaagaagtatttggatttgcgtctgtctcacatttct |
879 |
T |
|
| Q |
242 |
tgtgtcctgttttgatatgaatgtgaattttgtgaagctagaattcaag-cttctttctatatgtgtgtttgatgccttctggacgcagttccaaacaga |
340 |
Q |
| |
|
|||||| | ||||||||| ||||||| || | ||| | |||||| ||| |||| |||||| ||||||||||| |||||||| |
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|
| T |
880 |
cgtgtcccg-----------------attttgtga-gctagaactccactcttttctctatacgtgggtttaatgcctgttggacgcagtttcaaacaga |
961 |
T |
|
| Q |
341 |
ctattatattggcacctattcaaaatattgtagcctaatcaaagattatatactccgtacgagctttagttaccgatatttgagaacaagagagaatt |
438 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||||||||||||| || ||| |||| |||||||| |||||||| |||||||||||||||| ||||| |
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|
| T |
962 |
ctattatatttgtacctattcaatatattgtagcctaatcaaatataatacactctctacgagctaaagttaccggtatttgagaacaagagcgaatt |
1059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 64918 - 64973
Alignment:
| Q |
163 |
aaaaataaactcaccctcattgttggtagattgaacttgttctagtgagtatttgg |
218 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| |||| |||||||||||||| |
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|
| T |
64918 |
aaaaataaactcacccttattagtggtagatagaacatgttttagtgagtatttgg |
64973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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