View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0919_low_44 (Length: 239)
Name: NF0919_low_44
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_44 |
 | |
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| [»] scaffold0436 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0149 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0670 (1 HSPs) |
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Alignment Details
Target: scaffold0436 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 881 - 1078
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
881 |
ataggtgggttaaaagaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggtgggtgtaagatt |
980 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
981 |
tatatatgatgtgaatatgccaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatga |
1078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 23844876 - 23844679
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |
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|
| T |
23844876 |
ataggtgggttaaatgaacgaataagatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatt |
23844777 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23844776 |
tagatatgatgtaaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatga |
23844679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 23210791 - 23210988
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||||||| |
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|
| T |
23210791 |
ataggtgggttaaatgaacgaataagatgaaggatgaagtgtgtcacaaggagtaaaagaagaagagaatgaaaattaaactaatggtgggtgtaagatt |
23210890 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23210891 |
tagatgtgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatga |
23210988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 24431474 - 24431671
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| | |
|
|
| T |
24431474 |
ataggtgggttaagtgaacggataagatgaaggatgaaatatgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagaat |
24431573 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24431574 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacataagatgatga |
24431671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 32410581 - 32410384
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32410581 |
ataggtgggttaaatgaacgaataagatgaaggatgaagtgtgccaccaggagtaaaagatgcagagaatgaaaattaaactaatggtgggtgtaagatt |
32410482 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32410481 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatga |
32410384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 23844886 - 23845083
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23844886 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcagtgggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatt |
23844985 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
23844986 |
tagatatgatgtgaatatgacaaaattatgagttagacataggtagacgaatatatggtgtaaaataattatgagttgctaatgacgtaagatgatga |
23845083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 18544653 - 18544739
Alignment:
| Q |
153 |
tgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
18544653 |
tgaatatgacaaaattatgagttagtcataagtagacaaatatatgatgtaaattaatgatgagttgctaatgacgtaagatgatga |
18544739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 36716 - 36913
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||| |||| |||| | ||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
36716 |
ataggtaggtttaatgcatggataagatgaaggatgaagtatgtcactatgagtaaaatatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
36815 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36816 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
36913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 24495459 - 24495262
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||| |||| |||| | ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||| |||||||||||| |
|
|
| T |
24495459 |
ataggtaggtttaatgcatggataagatgaaggatgaagtatgtcactaggagtaaaagatgctgagaatgaaaatcaaactaatggtgggtgtaagatt |
24495360 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495359 |
taaatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
24495262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 23450346 - 23450148
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| | ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
23450346 |
ataggtgggttaaatggacggataagatgaaggatgaagtatgtcactaagagtaaaaaatgcaaagaatgaaaattaaactaatggtgggtgtaagatt |
23450247 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgt-aaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23450246 |
tagatatgacgtgaatatgacaaaattaagagttagacataagtagacgaatatatggtgtaaaaataatgatgagttgctaatgacgtaagatgatga |
23450148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 50 - 239
Target Start/End: Complemental strand, 12057070 - 12056882
Alignment:
| Q |
50 |
gttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatttagatatg |
149 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12057070 |
gttaaatgaacggatatgatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatttagatat- |
12056972 |
T |
|
| Q |
150 |
atgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
12056971 |
atgtgaatatgacaaaattatgagttagacataagtagacaaatatatggtgtaaaataatgatgaattgctaatgacgtaagatgatga |
12056882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 13296298 - 13296217
Alignment:
| Q |
158 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||| || |||| |||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||| |
|
|
| T |
13296298 |
atgacaagatgatgacttagacttaagtagacgaatatatggtgtaagttgatgatgagttgctaatgacgtaagataatga |
13296217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 12191 - 12386
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||| | |||| |
|
|
| T |
12191 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaactaaactaatggtgggtgaacgatt |
12290 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
12291 |
tagatatgatgtgaatatgacaaaattatgagttagaaatgagtagacgaatatatggtataaaataatgatgagtttctaatgacgtaagatgat |
12386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 16478335 - 16478176
Alignment:
| Q |
78 |
aagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggcgggtgtaagatttagatatgatgtgaatatgacaaaattatgagttag |
177 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
16478335 |
aagtatgtcactaggagtaaaatatgcagagaatgaaaattgaactaatggtgggtgtaagatttagatatgatgttaatatgacaa--ttatgagttag |
16478238 |
T |
|
| Q |
178 |
acataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16478237 |
acataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatga |
16478176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 42516 - 42597
Alignment:
| Q |
158 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
42516 |
atgacaagatgatgacttagacttaagtagacgaatatatggtgtaaattaatgatgagttgctaatgacgtaagataatga |
42597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 16481281 - 16481242
Alignment:
| Q |
42 |
ataggtgggttaaatgaacggataagatgaaggatgaagt |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16481281 |
ataggtgggttaaatgaacggataagatgaaggatgaagt |
16481242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0670 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0670
Description:
Target: scaffold0670; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 5774 - 5701
Alignment:
| Q |
153 |
tgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatga |
226 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
5774 |
tgaacatgacaaaattatgagttagacataagtagacgaatatatggtgtaaattaatgaagagttgctaatga |
5701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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