View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_45 (Length: 232)
Name: NF0919_low_45
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 8523326 - 8523491
Alignment:
| Q |
11 |
tctttgaattcaatccttcttcattctattcttgtttgccttgtttgctgcaattttactttatggttgtttctctagtaaactggatttgtgttgatgt |
110 |
Q |
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| T |
8523326 |
tctttgaattcaatccttcttcattctattcttgtttgccttgtttgctgcaattttactttacggttgtttctctagtaaactggatttgtgttgatgt |
8523425 |
T |
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| Q |
111 |
tattgatctacaattgggtttgtttttctagggttgttattgatagaaattaatggtgataatgat |
176 |
Q |
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| T |
8523426 |
tattgatctgcaattgggtttgtttttctggggttgttattgatagaaattaatggtgatgatgat |
8523491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 1009697 - 1009609
Alignment:
| Q |
11 |
tctttgaattcaatccttcttcattctattcttgtttgccttgtttgctgcaattttactttatggttgtttctctagtaaactggatt |
99 |
Q |
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| T |
1009697 |
tctttgaattcaatccttcttcattctattcttatttgccttgtttgctgcaattttactttacggttgtttctctagtaaactggatt |
1009609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 1009611 - 1009558
Alignment:
| Q |
123 |
attgggtttgtttttctagggttgttattgatagaaattaatggtgataatgat |
176 |
Q |
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| T |
1009611 |
attgagtttgtttttctggggttgttattgatagaaattaatggtgatgatgat |
1009558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 3455202 - 3455367
Alignment:
| Q |
11 |
tctttgaattcaatccttcttcattctattcttgtttgccttgtttgctgcaattttactttatggttgtttctctagtaaactggatttgtgttgatgt |
110 |
Q |
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| T |
3455202 |
tctttgaattcaatccttcttcattctattcttgtttgccttgtttgctgcaattttactttacggttgtttttctagtaaactggatttatgttgatgt |
3455301 |
T |
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| Q |
111 |
tattgatctacaattgggtttgtttttctagggttgttattgatagaaattaatggtgataatgat |
176 |
Q |
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| T |
3455302 |
tattgatatgtaattgggtttgtttttgtggggttgttattgatagaaattaatggtgattatgat |
3455367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 42878412 - 42878575
Alignment:
| Q |
13 |
tttgaattcaatccttcttcattctattcttgtttgccttgtttgctgcaattttactttatggttgtttctctagtaaactggatttgtgttgatgtta |
112 |
Q |
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| T |
42878412 |
tttgaattcaatccttcttcattctatttttgtttgcattgtttgctgcaattttactttacggttgtttctctagtaaactgaatttgtgttggtgtta |
42878511 |
T |
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| Q |
113 |
ttgatctacaattgggtttgtttttctagggttgttattgatagaaattaatggtgataatgat |
176 |
Q |
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||||||| |||||| |||||||||| | |||||||||||||||||||||||||||||| ||||| |
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| T |
42878512 |
ttgatctgcaattgagtttgtttttttggggttgttattgatagaaattaatggtgatgatgat |
42878575 |
T |
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