View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_6 (Length: 471)
Name: NF0919_low_6
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 101 - 443
Target Start/End: Complemental strand, 38791934 - 38791591
Alignment:
| Q |
101 |
taacaagagataagaatcagccaccatccaaggtccgttgtaaagggcatgattgtaatcttcttcagttgcgaacttcacagagaagaacccattttcc |
200 |
Q |
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| T |
38791934 |
taacaagagataagaatcagccaccatccaaggtccgttgtaaagggcatgattgtaatcttcttcagttgcgaacttcacagagaagaacccattttcc |
38791835 |
T |
|
| Q |
201 |
atatctgttactgtaatggttccaccatttttg-tccaagaatggtgaagcttgtgttgtagtgtttgaaaggtgagattttgttcagcaaggatttgaa |
299 |
Q |
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| T |
38791834 |
atatctgttactgtaatggttccaccatttttggtccaagaatggtgaagcttgtgttgtagtgtttgaaaggtgagattttgttcagcaaggatttgaa |
38791735 |
T |
|
| Q |
300 |
caatgagcgtgtgtttccatgggtttgaccagtgagacatatcttcatcggtgaacggaatatcaggacctgcaacgccactgtcgacaaaccctaactc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38791734 |
caatgagcgtgtgtttccatgggtttgaccagtgagacatatcttcatcggtgaacggaatatcaggacctgcaacgccactgtcgacaaaccctaactc |
38791635 |
T |
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| Q |
400 |
agcttttaggtcgttagccattttgttttctcaatccctctaat |
443 |
Q |
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| T |
38791634 |
agcttttcggccgttagccattttgttttctcaatccctctaat |
38791591 |
T |
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