View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0919_low_8 (Length: 454)
Name: NF0919_low_8
Description: NF0919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0919_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 121 - 425
Target Start/End: Complemental strand, 43619370 - 43619066
Alignment:
| Q |
121 |
tcataggtgatataagatgctaagtagaaattaatgatttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggtgtttgctc |
220 |
Q |
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| T |
43619370 |
tcataggtgatataagatgctaagtagaaattaatgatttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggtgtttgctc |
43619271 |
T |
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| Q |
221 |
agcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataatgtgtccaaca |
320 |
Q |
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| T |
43619270 |
agcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataatgtgtccaaca |
43619171 |
T |
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| Q |
321 |
acaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatacctctccatgaattttatcagctgcacctgcatagtaacgaagtg |
420 |
Q |
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| T |
43619170 |
acaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatacctctccatgaattttatcagctgcacctgcatagtaacgaagtg |
43619071 |
T |
|
| Q |
421 |
tattt |
425 |
Q |
| |
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||||| |
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| T |
43619070 |
tattt |
43619066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 177 - 425
Target Start/End: Complemental strand, 43626692 - 43626444
Alignment:
| Q |
177 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaa |
276 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| | |
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| T |
43626692 |
ttagctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagctaaggaagggctaactttggtga |
43626593 |
T |
|
| Q |
277 |
agaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatac |
376 |
Q |
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| T |
43626592 |
agaaaaccatagtgggagcattccatggaatgatgtgtcccacaacaccaattggttccatcagtgtgtatgcatggaattggccagaagattttaatac |
43626493 |
T |
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| Q |
377 |
ctctccatgaattttatcagctgcacctgcatagtaacgaagtgtattt |
425 |
Q |
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||| ||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
43626492 |
ctcaccatgaattttatcagcagcacctgcatagtaacgtagtgtattt |
43626444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 415
Target Start/End: Original strand, 32408372 - 32408610
Alignment:
| Q |
177 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaa-gcaagggctaaccttgaca |
275 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |||||||| || | ||||| || || |||||||| || ||| | || |||||| || |
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| T |
32408372 |
ttagcaagatgagcataaaacaaagcagagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagccaaagcaggagc-aaccttagca |
32408470 |
T |
|
| Q |
276 |
aagaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaata |
375 |
Q |
| |
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|||| | | | ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||| | ||| |||||| | |
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| T |
32408471 |
gcaaacatagtactaggaaaattccaaggaataatgtgtccaacgacaccgattggctccatcaaagtatatgcgtgcaactcccgagcaggttttaaaa |
32408570 |
T |
|
| Q |
376 |
cctctccatgaattttatcagctgcacctgcatagtaacg |
415 |
Q |
| |
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||| || ||||||||||| || ||||| ||||||||||| |
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| T |
32408571 |
ccttgccgtgaattttatccgcagcaccggcatagtaacg |
32408610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 346
Target Start/End: Complemental strand, 32433421 - 32433282
Alignment:
| Q |
207 |
agaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaa |
306 |
Q |
| |
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|||||||||||||||||||| || | ||||| || || |||||||| || ||||| | |||| ||||||||| ||| || || |||||||| | |
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| T |
32433421 |
agaggtgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacataatagttgggaaattccaaggta |
32433322 |
T |
|
| Q |
307 |
taatgtgtccaacaacaccaattggttccatcaatgtata |
346 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| ||||| |
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| T |
32433321 |
taatgtgtccaacaacaccaataggttccatcaaagtata |
32433282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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