View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920-INSERTION10 (Length: 670)
Name: NF0920-INSERTION10
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920-INSERTION10 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 1 - 670
Target Start/End: Complemental strand, 6551638 - 6550964
Alignment:
| Q |
1 |
cccatcggtcactccagaaagtaaatcatcctcgtccgggagtagatttccaataatttgagcctcgagttcttcaagagagtcagaaagcttctcttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6551638 |
cccatcggtcactccagaaagtaaatcatcctcgtccgggagtagatttccaataatttgagcctcgagttcttcaagagagtcagaaagcttctcttcc |
6551539 |
T |
|
| Q |
101 |
tcataatttgatgcaattgtatccactgaatgtccatataaagcattattcgcagataatcgcactacaccgacagaaaaatacaaagacatagcagatt |
200 |
Q |
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| T |
6551538 |
tcataatttgatgcaattgtatccactgaatgtccatagaaagcattattcgcagataatcgcactacaccaacagaaacatacaaagacatagtagatt |
6551439 |
T |
|
| Q |
201 |
agccaacaattttcacagtaaactttagcatacaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaacttgagaaaaggctgct |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6551438 |
agccaacaattttcacagtaaactttagcataaaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaacttgagaaaaggctgct |
6551339 |
T |
|
| Q |
301 |
ttcgtgccgagaggcaactatatcatcttctttactatcttcaaagggttttattccttgatcagaatctacatgacataacaaagtcaaagaataattg |
400 |
Q |
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| T |
6551338 |
ttcgtgccgagaggcaactatatcatcttctttactatcttcaaagggttttattccttgatcagaatctacatgacataacaaagtcaaagaataattg |
6551239 |
T |
|
| Q |
401 |
gatgtgtcattttcatcaacaaagtaaggcatcaatgcatgtctat------gactttatttctgcacaattataacaagaatcttggtcgaacgttttt |
494 |
Q |
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| T |
6551238 |
gatgtgtcattttcatcaacaaagtaaggcatcaatgcatgtctatgactatgactttatttctgcacaatcataacaagaatcttggtcgaacgttttt |
6551139 |
T |
|
| Q |
495 |
ctgtacaaatattccttacaatacggcccttttccaaatttaagtttaaatttataaaacatggatattgaaattgagatttagatatgttcaaaataac |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6551138 |
ctgtacaaatattccttacaatacggcccttttccaaatttaagtttaaatttataaaacatggatattgaaattgagatttagatatgttcaaaataac |
6551039 |
T |
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| Q |
595 |
ataaatattatgaaaccagaaacaagcgaattaaaacaaacgtgcattatgctaaaaatatatatataacgaaatg |
670 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6551038 |
atatatattatgaaa-cagaaacaagcgaattaaaacaaacgtgcattatgctaaaaatatatatacaacgaaatg |
6550964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 26 - 308
Target Start/End: Original strand, 49061300 - 49061582
Alignment:
| Q |
26 |
tcatcctcgtccgggagtagatttccaataatttgagcctcgagttcttcaagagagtcagaaagcttctcttcctcataatttgatgcaattgtatcca |
125 |
Q |
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|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||| |
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| T |
49061300 |
tcatcctcatcctggagtagatttccaatagtttgagcctcgagttcttcaagagagacacaaagcttctcttcctcataatgtgatgcaattgcatcca |
49061399 |
T |
|
| Q |
126 |
ctgaatgtccatataaagcattattcgcagataatcgcactacaccgacagaaaaatacaaagacatagcagattagccaacaattttcacagtaaactt |
225 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||| || || ||| |||||||||||||||| ||||| ||| | |||| ||| |||||| |
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| T |
49061400 |
ctgaatgtccatgtaaagcattattcacagataatcgcactgtacgaactgaagcatacaaagacatagcatattagtcaatagttttgacaagaaactt |
49061499 |
T |
|
| Q |
226 |
tagcatacaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaacttgagaaaaggctgctttcgtgcc |
308 |
Q |
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||||||||||||||| |||||||||| || |||| |||| ||||||||||| ||||||||||||| || || |||||||||| |
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| T |
49061500 |
tagcatacaattttgaaaagaaaacttacgtttcctgctaaacaaatctgatggagaacttgagaagagactactttcgtgcc |
49061582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 448
Target Start/End: Original strand, 49061675 - 49061751
Alignment:
| Q |
372 |
catgacataacaaagtcaaagaataattggatgtgtcattttcatcaacaaagtaaggcatcaatgcatgtctatga |
448 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| | |||| | ||||||| || |||||||||||||| ||||| |
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| T |
49061675 |
catggcataacaaagtcaaagaataattggatgtaccgtttttaccaacaaactagagcatcaatgcatgtatatga |
49061751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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