View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920-INSERTION12 (Length: 669)
Name: NF0920-INSERTION12
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920-INSERTION12 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 183 - 559
Target Start/End: Complemental strand, 3345782 - 3345404
Alignment:
| Q |
183 |
ttctgtctcgttggattgtagaggcctatataccaagttgtttttgccccaatgaactcccctcattctccttttaaacacatcgacccaacaaaattct |
282 |
Q |
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| T |
3345782 |
ttctgtctcgttggattgtagaggtctatataccaagttgtttttgccccaacgaactcccctcattctccttttaaacacatcgacccaacaaaatcct |
3345683 |
T |
|
| Q |
283 |
tgctccttaaaaattacaaatatttaattatgttagatgatttagatttaaaagtactgttaattatccttctaagtaagttctattaattaattaactt |
382 |
Q |
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| T |
3345682 |
tgctacttaaaaattacaaatatttaattatgttagatgatttagatttaaaagtactattaattacccttctaagtaagttctattaattaattaactt |
3345583 |
T |
|
| Q |
383 |
gatg--tacacacacaagatatgtggggtttgtctaatattggaaggaggtcatcaaaaagctttttagtgtgtttggcaagttctaatcagtggtgtga |
480 |
Q |
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| T |
3345582 |
gatgtatacacacacaaaatatgtggggtttgtctaatattggaaggaggtcatcaaaaagctttttagtgtgtttggcaagttctaatcagtggtgtga |
3345483 |
T |
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| Q |
481 |
atgagttagtggaagaattcaacatgaattattgcacaaattggtttaacataaaatttaggtattcatattttattag |
559 |
Q |
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| T |
3345482 |
atgagttagtggaagaattcaacatgaattatggcacaaattggttcaacataaaatgtaggtattcatatttttttag |
3345404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 3345877 - 3345781
Alignment:
| Q |
7 |
aagttttaaatgaggctttgcaaccattcataatagcgtcaaaaatggaactgatgctaagattgttagagatttcgtcaaccatttgcttacaatt |
103 |
Q |
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| T |
3345877 |
aagttttagatgaggttttgcaaccattcataatagcgtcaaaaatggaattgatgttaagattgttagagatttcgtcaaccatttacttacaatt |
3345781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 550 - 625
Target Start/End: Complemental strand, 3344998 - 3344923
Alignment:
| Q |
550 |
attttattagaagaaagtgagaaatgtacaaatagtacttaacctattcatgtggctatcaaaaagagttccaact |
625 |
Q |
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| T |
3344998 |
attttattagaagaaagtgagaaattgacaaatagtacttaacctattcatgtggctatcaaaaagagttccaact |
3344923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 3344902 - 3344851
Alignment:
| Q |
618 |
ttccaactaaccataacttagttaggagttgaatcatggaaaaggatgctaa |
669 |
Q |
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|
| T |
3344902 |
ttccaactaaccataacttagttaggagttgaatcatggaaaaggatgctaa |
3344851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 13019110 - 13019228
Alignment:
| Q |
130 |
gaagaaaatctcaaattatcaaaccaatttattgcttcttttaaacctcttgcttctgtctcgttggattgt-agaggcctatataccaagttgtttttg |
228 |
Q |
| |
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|||||||||||| |||| ||||| ||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||| || |||||||||| || | |
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| T |
13019110 |
gaagaaaatctcgaattgccaaacgaatttatcgcttcttttaaaccacttgcttctgcctcgttggattgtgggaggcctttaaaccaagttgtcttcg |
13019209 |
T |
|
| Q |
229 |
ccccaatgaactcccctca |
247 |
Q |
| |
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||| ||||||||||||||| |
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| T |
13019210 |
ccctaatgaactcccctca |
13019228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 130 - 244
Target Start/End: Complemental strand, 9252344 - 9252229
Alignment:
| Q |
130 |
gaagaaaatctcaaattatcaaaccaatttattgcttcttttaaacctcttgcttctgtctcgttggattgt-agaggcctatataccaagttgtttttg |
228 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| || ||| || |||||||||| || | |
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| T |
9252344 |
gaagaaaacctcaaattatcaaaccaatttatcgcttcttttaaatctcttgcttccacctcgttggattgtgggatacctttaaaccaagttgtattcg |
9252245 |
T |
|
| Q |
229 |
ccccaatgaactcccc |
244 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
9252244 |
ccccaatgaactcccc |
9252229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 37490801 - 37490684
Alignment:
| Q |
130 |
gaagaaaatctcaaattatcaaaccaatttattgcttcttttaaacctcttgcttctgtctcgttggattgtag-aggcctatataccaagttgtttttg |
228 |
Q |
| |
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|||| ||| ||||||||| ||| |||||||| ||||||||||||||| ||||||| | ||||||||||| | |||||| || || ||||||| || | |
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| T |
37490801 |
gaaggaaacctcaaattaccaagacaatttatcgcttcttttaaaccttttgcttcctccacgttggattgtggaaggcctttaaacgaagttgtcttcg |
37490702 |
T |
|
| Q |
229 |
ccccaatgaactcccctc |
246 |
Q |
| |
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| |||||| ||||||||| |
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| T |
37490701 |
ctccaatgtactcccctc |
37490684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 37262763 - 37262703
Alignment:
| Q |
139 |
ctcaaattatcaaaccaatttattgcttcttttaaacctcttgcttctgtctcgttggatt |
199 |
Q |
| |
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||||||||| ||| |||||||||| | ||||||| |||| ||||||| |||||||||||| |
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| T |
37262763 |
ctcaaattaccaagccaatttattccatcttttacacctattgcttccatctcgttggatt |
37262703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 28283839 - 28283769
Alignment:
| Q |
128 |
cagaagaaaatctcaaattatcaaaccaatttattgcttcttttaaacctcttgcttctgtctcgttggat |
198 |
Q |
| |
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|||||| ||| ||||||||| || |||||||||||||||||||||| | |||||||| | | |||||||| |
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| T |
28283839 |
cagaaggaaacctcaaattactaagccaatttattgcttcttttaaaacccttgcttccgccgcgttggat |
28283769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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