View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0920-INSERTION3 (Length: 731)
Name: NF0920-INSERTION3
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920-INSERTION3 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 731
Target Start/End: Original strand, 15886085 - 15886826
Alignment:
| Q |
8 |
aatgcatcaatcatatcgcacctcctctttgtggatgattgttttttattgtgtagagctaatgctaatgaagccatcaaaatgaagaatattttgtcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15886085 |
aatgcatcaatcatatcgcacctcctctttgtggatgattgttttttattgtctagagctaatgctaatgaagccatcaaaatgaagaatattttgtcca |
15886184 |
T |
|
| Q |
108 |
ttta----cataaaagtcttaagtcc------gaatcttnnnnnnnnnnnnttgagatttttagtaccagaaatgaatcacaacatcgcataaaaacata |
197 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15886185 |
tttaattacataaaagtcttaagtcaagctatgaatcttaaaaaaaaaa--ttgagattttttgtaccagaaatgtatcacaacatcgcataaaaacata |
15886282 |
T |
|
| Q |
198 |
gcaaacaagcttgggt-----ttgttcttggtac-ggtaaatatctaggctgaccttcttcgatcggaagaagtaagaaagcaactttcagttttatcaa |
291 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15886283 |
gcaaacaagcttgggtccaggttgttcttggtaccggtaaatatctaggctgaccttcttcgatcggaagaagtaagaaagcaactttcagttttatcaa |
15886382 |
T |
|
| Q |
292 |
agataagatttggaagaaaattaattcatggagtagtaa----cttttcaagggaatgatataaaggttcttattaaattggtgctccactctattccaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15886383 |
agataagatttggaagaaaattaattcatggagtagtaagagacttttcaagggaatgatataaaggttcttattaaattggtgctccactctatttcaa |
15886482 |
T |
|
| Q |
388 |
cctatcttatgagcttgttcactctgcatgtatcgttttgtgatgaaatagaaaagataatgaacacgttttggtggggtcattcagaagctcaaaacaa |
487 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15886483 |
cctatcttatgagcttgttcactcttcatgtatcgttgtgtgatgaaatagaaaagatgataaacacgttttggtggggtcattcagaagctcaaaacaa |
15886582 |
T |
|
| Q |
488 |
cggtatttgtgggctctaatgggacaaattatccatgcacaaaaagaatggaggtatgagctttaaaaatctttctttagtatagctatgcttgggaaat |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15886583 |
tggtatttgtgggctctaatgggacaaattatccatgcacataaagaatggaggtatgagctttaaaaatctttctttagtatagttatgcttgggaaat |
15886682 |
T |
|
| Q |
588 |
aggagtggagacgtatgataaatcccgactctcattgctagactatataanggaagatattatttcccgttgcaaattttcttttaatctaaattggggc |
687 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15886683 |
aggagtggagaggtatgataaatcccgactctcattgctagactatataaaggaagatattatttcccgttgcaaattttcttttaatctaaattggggc |
15886782 |
T |
|
| Q |
688 |
ataagcccagctttgtgtagaaaagtatatgtaagaataacacg |
731 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15886783 |
ataagcccagctttgtgtagaaaagtatatgtaagattaacacg |
15886826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 19935677 - 19935604
Alignment:
| Q |
257 |
ggaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa |
330 |
Q |
| |
|
||||||||||| ||||| || |||| ||| ||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
19935677 |
ggaagaagtaaaaaagcgacgttcaatttcatcaaagatcgcatttggaagaaaattaactcatggagcagtaa |
19935604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 26368802 - 26368872
Alignment:
| Q |
260 |
agaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa |
330 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| | |||||||| || |||||||| ||||||||||| |
|
|
| T |
26368802 |
agaagtaagaaagcaactttcgagtttattaaagacagaatttggaaaaagattaattcctggagtagtaa |
26368872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 17779614 - 17779544
Alignment:
| Q |
260 |
agaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa |
330 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||| |||||||| || |||||||| ||||||||||| |
|
|
| T |
17779614 |
agaagtaagaaagcaactttcgggtttattaaagatagaatttggaaaaagattaattcctggagtagtaa |
17779544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 46389372 - 46389319
Alignment:
| Q |
507 |
tgggacaaattatccatgcacaaaaagaatggaggtatgagctttaaaaatctt |
560 |
Q |
| |
|
|||||||||||||| || | ||||| |||||||||||||||||||||||||| |
|
|
| T |
46389372 |
tgggacaaattatctattcttaaaaaagatggaggtatgagctttaaaaatctt |
46389319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 474
Target Start/End: Original strand, 48211958 - 48212051
Alignment:
| Q |
381 |
attccaacctatcttatgagcttgttcactctgcatgtatcgttttgtgatgaaatagaaaagataatgaacacgttttggtggggtcattcag |
474 |
Q |
| |
|
|||||||| ||| |||||||||| || ||||| | | | ||||| |||||||| || || ||||| |||||| | |||||||||||||| |||| |
|
|
| T |
48211958 |
attccaacgtattttatgagcttatttactctacctttgtcgttgtgtgatgagattgagaagatgatgaactctttttggtggggtcactcag |
48212051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 48212084 - 48212137
Alignment:
| Q |
507 |
tgggacaaattatccatgcacaaaaagaatggaggtatgagctttaaaaatctt |
560 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
48212084 |
tgggacaaattatctatgcataaaaaagatggaggtatgtcctttaaaaatctt |
48212137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 6840 - 6787
Alignment:
| Q |
507 |
tgggacaaattatccatgcacaaaaagaatggaggtatgagctttaaaaatctt |
560 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
6840 |
tgggacaaattatctatgcataaaaaagatggaggtatgagctttaaaaatctt |
6787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 21707070 - 21707123
Alignment:
| Q |
507 |
tgggacaaattatccatgcacaaaaagaatggaggtatgagctttaaaaatctt |
560 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
21707070 |
tgggacaaattatctatgcataaaaaagatggaggtatgagctttaaaaatctt |
21707123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 5580231 - 5580322
Alignment:
| Q |
239 |
ggctgaccttcttcgatcggaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtagtaa |
330 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| ||||| || |||| ||| ||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
5580231 |
ggcttaccttctatgattggaagaagtaaaaaagcgacgttcaatttcatcaaagatcgcatttggaagaaaattaactcatggagcagtaa |
5580322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 16983862 - 16983932
Alignment:
| Q |
257 |
ggaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtag |
327 |
Q |
| |
|
|||||||||||||||| |||||| | ||| || || |||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
16983862 |
ggaagaagtaagaaagaaacttttaatttcattaaggataggatttggaacaaaattaattcgtggagtag |
16983932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 34671961 - 34672002
Alignment:
| Q |
253 |
gatcggaagaagtaagaaagcaactttcagttttatcaaaga |
294 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
34671961 |
gatcggaagaagtaagaaatcaactttcaattttatcaaaga |
34672002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 229 - 327
Target Start/End: Original strand, 80235 - 80333
Alignment:
| Q |
229 |
taaatatctaggctgaccttcttcgatcggaagaagtaagaaagcaactttcagttttatcaaagataagatttggaagaaaattaattcatggagtag |
327 |
Q |
| |
|
|||||||||||||| ||| | | ||| |||||||||| || || || |||| ||||||||||||| | ||||||||||| || ||||| |||||||| |
|
|
| T |
80235 |
taaatatctaggcttaccgtatatgattagaagaagtaaaaaggcgacgttcaattttatcaaagatcatatttggaagaagataaattcttggagtag |
80333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 39219517 - 39219551
Alignment:
| Q |
296 |
aagatttggaagaaaattaattcatggagtagtaa |
330 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39219517 |
aagatatggaagaaaattaattcatggagtagtaa |
39219551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 153 times since January 2019
Visitors: 6695