View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920-INSERTION4 (Length: 710)
Name: NF0920-INSERTION4
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920-INSERTION4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 198 - 710
Target Start/End: Original strand, 42236141 - 42236653
Alignment:
| Q |
198 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
297 |
Q |
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| T |
42236141 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
42236240 |
T |
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| Q |
298 |
caacctcaactccatcatcctcatcacaagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaagag |
397 |
Q |
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| T |
42236241 |
caacctcaactccatcatcatcatcacaagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaggag |
42236340 |
T |
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| Q |
398 |
cagtggtgaactgagatggaaatgggtggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttactt |
497 |
Q |
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| T |
42236341 |
cagtggtgaactgagatggaaatgggtggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttactt |
42236440 |
T |
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| Q |
498 |
cgtgattacaaaaaagttcgtgattatgaatccaaatcagaatcatcaccacccaacaacaatagcaacaaagatcattttccttcttattggattctca |
597 |
Q |
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| T |
42236441 |
cgtgattacaaaaaagttcgtgattatgaatccaaatcagaatcatcaccacccaacaacaatagcaacaaagatcattttccttcttattggattctca |
42236540 |
T |
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| Q |
598 |
acaaacaacaacgtaaagaacaaaatcttccttctaatatggtttttgaagtttatcaagctataagtgaagttcttcaaagaaaacaatcacaaagaaa |
697 |
Q |
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| T |
42236541 |
acaaacaacaacgtaaagaacaaaatcttccttctaatatggtttttgaagtttatcaagctataagtgaagttcttcaaaggaaacaatcacaaagaaa |
42236640 |
T |
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| Q |
698 |
caaccccactcca |
710 |
Q |
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| T |
42236641 |
caaccccactcca |
42236653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 42235954 - 42236047
Alignment:
| Q |
11 |
aattcattaattcactcaccaaatctcatgccaaatctaaacaatgtctgatccttcgacttccaccaccccattaccacatccatcaatccta |
104 |
Q |
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| T |
42235954 |
aattcattaattcactcaccaaatctcatgccaaatctaaacaatgtctgatccttccacttccaccaccccattaccacatccatcaatccta |
42236047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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