View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0920-INSERTION5 (Length: 358)
Name: NF0920-INSERTION5
Description: NF0920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0920-INSERTION5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 4075288 - 4074937
Alignment:
| Q |
8 |
gtctccctggtgtgcctgatacttggaatgagcttctttatgcctatattttccatagatgacaaacatttgatattgaaaactttaagtacaatacgtt |
107 |
Q |
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| T |
4075288 |
gtctccctggtgtgcctgatacttggaatgagcttctttatgcctatattttccatagatgacaaacatttgatattgaaaacttgaagtaaaatatgtt |
4075189 |
T |
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| Q |
108 |
acatttatgtttggtttggtttgttatcttgttttctcttgatgttgactgaggtgagggaagttgaagtgtaaagaatattgttatccctaatccttaa |
207 |
Q |
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| T |
4075188 |
acatttatctttggtttgttttgttatcttgttttctcttgatgttgactgaggtgagggaagttgaagtgtaaagaatattgttatccctaatccttaa |
4075089 |
T |
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| Q |
208 |
aaaacatgcatatgctagtg-nnnnnnnnnaatgtcatgtatctttttcatcacaatgatacttgtttaccttattaaacaaaaaattagacctagtttc |
306 |
Q |
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| T |
4075088 |
aaaacatgcatatgctagtgttttttttttaatgtcatgtatctttttcatcacaatgatacttgtttaccttattaaacaaaaaattagacctagtttc |
4074989 |
T |
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| Q |
307 |
aagctgaatgacataaaagtaatggcgacagtagttagatccaaaatattct |
358 |
Q |
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| T |
4074988 |
aagctgaatgacataaaagtaatggcgacagtagttggatccaaaatattct |
4074937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 25824895 - 25824924
Alignment:
| Q |
31 |
tggaatgagcttctttatgcctatattttc |
60 |
Q |
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| T |
25824895 |
tggaatgagcttctttatgcctatattttc |
25824924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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